RNA id: TCONS_00055870


Basic Information

Item Value
RNA id TCONS_00055870
length 4143
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_028845
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30145984 ~ 30174588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGCTGCTGATCTATTCCTGCATTCAGCTGAATTATGAAGGCTGATCAATGACTGGAGATTTGTGATTGTTCATCAGTTTCTTATAGAGTTTCTGCTGGAGATCAAACTCTTCAGGTCCATCATGGAGGACAAACACACACCTGGAGATCTGGATTTGTCTACAGGATGCAGttcagttcatcagaacagagcagaagcagagcccagctgtgtgtctatgaagagtgacgtGTCTATGGATCCACCAACAAATTTTAAGAGTGGAAACACAggacctgctgtcagctCACGTAAGaggaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcaTCTATGGATCCACCATTAAAATTTAAGAGTAAAAACACACaacctgctgtcagtgtggatAGAGATGATCAGTCTGGAGACCTGCTgcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccacCATGAAGAACAAgcatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttatacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggtGAAGATCAAaaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagaacTGAACTTGATccgagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagtctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagctgcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgatgagcatcaagccagcagaatcatctctcacataagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgccttggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacaaAGAAGAGAGAACTGCTGGAGTTGATTTTAGGATATTCATATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTAtgatctgctcagttcagcagTAGATGAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctcagagagcatcaggagaatcacacagtacattaaagaccAGATCAAGAGCGATGACTATTTCAAGAGAGCAGCTGAAAGAttcatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttTGAGCTGCAGAAATTCAACACATCAGCTGAGGGAAGACTGAGACTGACAacagctgtgagaaactgcagaagagctctactacagtggtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggagacactgagACTACAGAGCTGTAAACTCACTgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacgctgagactggtcatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccatgtgtaaactcactgttcagtgttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaactctgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgtcCCGAATgggagagaatcagccgtatcctgatcatccagacagatttgatgtctggtctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatggtggtgtgtttatatcagtgtcatataagagcatcagtaGGAAGGGAGTAGGTGTTAAGTGTGCgtttggatataatgctcagtcctggagtttgatctgTGATTCCTCTAGtttcatattcagtcacaataacacacacactgatctcccagtgaagccgcTCAGCAGTAGAATAGGAGTGCTtttggatcacagtgcaggaactctgatcttctacaacatttatagagacacaatgagcctcatccactcatttcagaccacattcactgagcagCTCTGCCCTGGGTTTAGGCCTAGTTCTGGaacatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagtgtgcttgtgtgtgtgcacgtgtgtgtgtgtttgcgcgtaagagagagagagagagagagagtgtgtgtgtgtgtgtcagtcttcatcagtgtcatcattgatgtttatgaagtgtcctccaggatgctgctgtgttcagatcagctcattcttgtctacagattgatcttcttcattgtttctctgttgcttgagcacaaataataaaagtcaatgtcaaatccactgctgatattagaatgtgatgatgaacatggaaatgtctgaatcctgtctgaatctttgtcaaatcttgaatcaactgtagagaaatctagcagctcaatgaataaaggagaaatgaagtgtga

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-160 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000135420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055867 lncRNA downstream 6679 30106649 ~ 30141117 (-) False XLOC_028844
TCONS_00058238 lncRNA downstream 7080 30107746 ~ 30140716 (-) True XLOC_028844
TCONS_00055866 lncRNA downstream 35574 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00058237 lncRNA downstream 42853 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00058236 lncRNA downstream 180662 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058239 lncRNA upstream 141215 30315803 ~ 30319511 (-) True XLOC_028848
TCONS_00055878 lncRNA upstream 189174 30363762 ~ 30364502 (-) True XLOC_028851
TCONS_00058240 lncRNA upstream 231266 30405854 ~ 30407827 (-) True XLOC_028852
TCONS_00057363 lncRNA upstream 366411 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057362 lncRNA upstream 366411 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00055864 mRNA downstream 90188 30045493 ~ 30057608 (-) False XLOC_028843
TCONS_00055865 mRNA downstream 92600 30048713 ~ 30055196 (-) True XLOC_028843
TCONS_00055863 mRNA downstream 314470 29828668 ~ 29833326 (-) True XLOC_028841
TCONS_00055862 mRNA downstream 326657 29820388 ~ 29821139 (-) True XLOC_028839
TCONS_00055861 mRNA downstream 378492 29758289 ~ 29769304 (-) True XLOC_028838
TCONS_00055872 mRNA upstream 34602 30209190 ~ 30249797 (-) False XLOC_028846
TCONS_00055873 mRNA upstream 48095 30222683 ~ 30249797 (-) False XLOC_028846
TCONS_00055874 mRNA upstream 51569 30226157 ~ 30249792 (-) True XLOC_028846
TCONS_00055875 mRNA upstream 87811 30262399 ~ 30269748 (-) True XLOC_028847
TCONS_00055876 mRNA upstream 174088 30348676 ~ 30349370 (-) True XLOC_028849
TCONS_00055851 other downstream 1292119 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1605661 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1715351 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3006493 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3048511 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 780753 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 800328 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 810768 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 817293 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 818598 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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