RNA id: XM_021590682.2


Basic Information

Item Value
RNA id XM_021590682.2
length 7129
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110509667
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13262666 ~ 13336582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgtttactagggttaaatgtcaggaatggtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgcacgttattcaatcattgcatacAAACGGCTCGCTCGCGCATGTCTTCTTAGctaggcgctaaaatagaacttggttctatttgtgacgcttgatgcgctgcaagtcccacctatcccatctcctcattggtttttaggggcATATAACCACGTGGGGGATTGAAAGattaactgaggtccacactccagtccagttggtagtggtaatgcaccttaaagttggttgcccaCTGTCATATAAAGTCCAAATAAGAAGTCTGACAGAAGAGAGATTACTGAAATTGAActcggtttacccttttatctgtggattaataacaacccaatgtttatccCAGgaaaaattagctagcaacagcaagctagctagctgaattgccatgaatgtttcatgcttttcgacctgtccccaaatgaatatagttggttcgGAGTTTGTTTGGATGTTTCAACCTGCGTGTCTTGAGCACATCTGGTGTGGATAGACAAAATCAACTTGCGCACACCCAGTCTAGTCAGCaagtaaggcactgcatctcagtgctagaggtgtcactacagacccgggtttgatcccgggctgtgtcacagccagccGGAATGTCCTTATCCGTAcggaagttgcagcgatgggacaagactgtaactaccaattggagatCGTGAAATTAGGGAGAAATGGGAGTTAAAAGTACCACAAAAAAAATAGCAAAGATGAAGAATGTAGCAAGACAAGAGCGTTGTCGCGTCCTGCATGCTTGGGATTTTCCAAGACCGGCGCGGGATTCTGTCTGCTGCTCTCACAAAGGTCACAGGTCGTCTTCATGGTTCCTCTCATTACAAACCACCATACTGAAGCTAATAGCTTTGGACTGAAGAGTTGAGGTGTGACATGACATTTGAAAGTAGACTCTTTGCTCGTCCCAGACTCACTTGTGAATATTGTTACAAAGAGTTCCTCTGTAGTTTGGTCTGATTTCACATTGTATTTTACATGCAGTTAGTAAGTTGTCCAATTCCTGGAAATTCACTAATAACCATACTGCAGTGAATAACCTTAGTCTACCTAAATCTTCTGCAGCATTAATTGTACATTTGACTCAACGTTTGCTCTGTTTTCTGATGTGAAGAGAATAGTTAATTGAAGTTGATGACATACATTTTTTGTTCAGGTCAACTTCAAACCACAGGTAGGAAAACATTTGGCAGACTTTATATGACACGTGTCAAACAAGGCAGAATCTATCCCGTGACACATTTCTATCAGGCTCACGCAATGATTTGTATGGAAattacattaaattctctggcaacagctctggtggacattcctacagtcagcatgccaattgcacactccctcaaaacttgacactTCTGTGgcaattgtgttgtgtgacaactgcacattttagagtggccttttgtccccagcacaaggtgcacctgtgtagtgatcattctgttaatcagcttcttgatattccaagATAACATGGATTATCTCggcaaagtagaaatgctcactaacagggattttctgtgaaaaatgtctgggatctttgaTTTCAGCTCgagaaacataggaccaacactttacgttttgggtttatatttttgttcagtggacATTATAAAGGGAcatatttttcagaataaaacaaTGGCCAGTTTGGGTGGCAGTTGTAtgcactgtttaaaaaaaaaaaattaaacagcaTAATAGGCTATACGTATCTTGGCTGtgattttttaatatttttaaatATGGCCCTTGAGCTGACTGAGTTTGACACCCTTGTTGTACAGGAACTAGCTATCCCCTAAACAAAAACACAAagcccctccctcttctcctcgtCATTGTGAACAAGTGTTTCTCTGCAGTGTCGTCAtagtctgtctcctcccctcagtgTCTTTGATTCACACTGCTGCTGGCTGCCTTAGGGTGTGATAAACACACGTCTCTCCAATGTGGCCTCGCTGAATCAACCCCATCTGATTCaccctggcacacacacaatctctctctctctctctgatgtaggCCCACCACTCACATTTGTTTTATCAGCTGTGGTAACGCTAAGCCAGAGATCAGATCCCCCTCCTCAGCCCCGATGCCCCTGATAGACATGACAGTGGCCCTCGTTGGCCTCGCCAATGTCAGACTCAGATGTTTCCACGATGACTTCATGCGGAATAGAATGTGTGCCGCACCTTGATTCCATTCTGGAATGTCCACAAGGATGAAATCCACCAGCCTGGGGAAGTTCTCAGCTCTCATATAGCGAAGTCAGACTGAGAGAGGAATTCCAAagaatatttgtgtgtgtgtgtgtgtgtctgtgcagccTTGCCTGCCTGTGAAAACAGATTAGAAATCCTTTACTGACCAATGCAGGCAGGAATGTGTTGGACCTTGAGCCTCACTCACTCAAAGGCCAGGGGAAATCAAGTGCTCATCACACCCAACACTCAGAAAACATTATCCTACAGATCCATCAACTGGTTGACGCGCACACAAGCACAGGGtcggggagtaactgattacatgtcaTCTGATTACAAAAAACGAATCCGTTACATTACCAGTAGAAATATTGTAATtggattacagatacttttgaaacaCTAGATGATTACATTTTGGATTACTTttcaattcagaaaggatgtttgcaaaaaaatacattgacacttttctgttttctcaatgacattcagttaaacattgaaaaaaggcacaagtttaagtttgttccacatGAGCAAGTCTGAGCACAAGTCCGAGACCACTATGATAACACACCAAACACGTTTGATGGAttctttttgtcttcttctaatgcctcttaaacgGAAAGTGAaccaaaagtaactgaaagtaattaGATTATGTCACTAAATTgggtaatctaacaattccattACTGATTTCAATTTTGGACAGCTAACTAGTAACTAAccgattacatttagaaagtaatctACCTgaccctacacaaacacacacgcacaccattgTGTAAAACAATAGTAATTACCAGCAGTAAGGCTTTTTTAGGAAGAGGAACTTGCTCAGTGCTAGGTCGTCCAagccctccaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtcataaCAAAGACACAGAGCTCTGCTCCACTGTAAACAAACTGAGCTGGAGACAGCCCACTGCCCTTATCTCTCTGCTGTCACAAGGACTGTGTCAAGAATGCCCttgatgtgagtgtgtgtcaacTTCTTCATCAAAAGTTACATCAAAAGTACTACTTACATGGTGGTTTTATTTCAAGCTATTTTGAGGGTGTTGTATTTTctttaatcaaaatatatttatatacatatttttttaaaggaaacTACTCAAAGTAGCTAACTATAAAAGCCTGTCAACCATTTTAATCTGGTGATGATGGTTTTAGGATGTGGTTTCCTCAAACCTCCTTGGTTGAATCTGCTCAGTAGTAAGTCCCTGTACCAGTAACTTTTTCCCAGCTTCATTCACATTTCAAGAAGCACAATTATACGTTTGAGAGTTCCTGGCACCAGTTGTTCCTTCCCCCAGTCGCAACAGCCCATTCTCCCTGCTCCTCTGCCCTGTAAACTTAACACAATGTCAACTAATACACAAAAGCTGTTATTTCTTCCTATTCCTGTTTTCCAATGTGGCGCATTCACAACCCTGAACTGAGATATCTGCTATGAATgggctccatctctccattcattCGGACTAAAACGCACCAGACCACAAGCACTAGAGACTACGTGTGAATGGGAGATGGCACAGTACAACCATTCACATAAGTCAAGTAGGTTCAACTAGGATTTCAGTGTTGCCTTTTTCACTGCAGTAATACATGTAGTATGGCTATGACCTCTAACTACTCTGGCTCCTCTGAAGAACGTGAAGTGTTCAACCTGAATGACATTGACTTGTGTTGACCACACAACTACGACATGAGTGCGCATGGCATAAGATCATGTAGGAATGGAGCAGGGTTAACTCATATGGGCACACAGAACAGGGCATAACTCCCCTCAAACGTCCTCCAGTAAAACTAGAACgttttaatgagagagagagagagagagagagagagagagagacggagagagagagattaaacgGTAACACGAGAATAACGTCACTCGCTCTCAGATGTAAGCAGACTGGTCCGGAGAAAACCGCTTGCGCCTCACTCATTCGTGGTCGAAGAGAGAAAGCGTGGGGTAGAAATAGACTTGGACCAAGGAATCGTGTGGGTAGAGGCAGCACACGGCATTATCCACAAAGAAACGTGTAACGCAAAAATAGTGGTTTTAAAAAGTTATTTCTGCCAGttggattttttttattgaaaagcGCCCATATTCATCGCTGGACGTTTTGCAAAACGTGGAAAACCTACCCGTTCTGAAGAGAAGACTTGCATAATCAGGTCTGAAGTGAACCTGACTCTGGCTCGTTCTCAAGACTCCACACAAAAGgtgtgtaGTTGGTGAGAAGCCAGCTGGCTGGCCCTGGAGACACGCCTTCACTACGATGTAGAGTccagaagagagagaacgagagagagagaaagacgaaaGCGATACTGTTTACTCGCTACGCACAAGACGGGATAGAGAGCAAGTGAAAGAGGGTGAGTAAGACAGTGGGAAGGACGGAAAGAAAATATCGAGTGACTGAGCAGAAAGAAGGAACAAGAACAACAGCAGTGCCCGAACCACATCAGGAGGAGATAAGAgcaaagaaagagagggacactGTGAATCATTGACCTCAGGCCCTGCCTCCAAACCAGCCTCTCccgccctccacctcctccttcctcctttccctgCGTTGGAACTGTTCACTCTCTCCCACACCTCTGTCACAACAGGAACCCATtctttgctctctccctccacccgttcccctcttcCTGAAGACCCCTGAGGACTTGAACCTTCACCTTTGACACCACCTGTGTGACCCCTGGATGACAGTCCACCTCTCCCGGAATCAACCCCGTCGAACTTCACTGAACAGACAACACCAGGAACACTTCAGAAGCACTGCAGACGTCAACACCACCATGTGTCACGTGATCGTGACCTGTCGCTCCATGCTGTGGACTCTACTCAGCATCGTGGTCGCCTTCGGCGAGCTCATCGCCTTCATGAGCACTGATTGGCTGGTGGGCTCCCCCCGGACACCGGACGCCGTCTTCAGCCCTCACGGCACCACTGCAGCCGGCGAGGCCTACCGGCCCACCCTGGGCATCTACGGCCGCTGCATCAAGCTGCCCCACCTGCAGCGCGGCGTGCTGTGCGGGCCGTACGCCGCGCACTTTGGGGAGATCGCCAGCGGGTTCTGGCAGGCGGCGGCCATCTTCCTGGCGGCAGGCATCCTGCTGCTGTGTGCCGTGGCCTTCATCTCCGTCTTCACCATGTGCTtccagagcatcatgaagaagagCATCTTCAACGTGTGTGGACTGCTGCAGGCCATCGCAGGTCTGTTTCTGATCCTGGGTCTGATGCTATACCCTGCAGGCTGGGGTTCAGACAAGGTGCAGCTGTACTGTGGTCAGGACGCGGCTCCCTACCGGTCGGGGCTGTGCACCATGGGCTGGGCCTTCTACACAGCCATGGGGGGCACCGTGCTCACCTTCGTCTGTGCTGTGTTCTCCGCCCAGGCCGAGATCGCCACGTCCTCAGACAAGGTGCAGGAGGAGATTGAGGAGGGCAAGAGCCTTATCTGCCTGCTCTGAGGCTGACGAGGAGGATTGTCACGTCCTACCCCCCTCGTCTCCACTCTGGGGCCCAGCTGTCAATCAAacggagcccccccccccccctcccccatattGTTTACCACTAAGACTGACTCTCTGACCTTTGACCctgtattgttgttattgttgatgtGGGAGAAATCTACAGTGCCAAGCTTTTCACAAACGTGTGTTTCAGTGTATTTCCTCTCTCCGCCACCAgaggtgctgtctgtctgtgttctgtgtgttattatttgTAATGTGTGCCAGTACCAGCTACCCTGACACCAGTAAGTTTGTATTGTAAATAAGtgtgcatatactgtacatagtgatgatgatgatctgAGAATGGTGGTCCTCTCAGCTCTGTTCAGGCTGTGTTTTAAATGATGTCACTCTCGCCTTGAATCCTGGTGTGATGATGTCACGACCTGAAGATCCGCCTACCTGGTGCTAGTCAACTGTAATAACGTAAAATCCCAGATAGAAGTTGCCCCTggctacagatctaggatcagatttccCAACCCCAAATCATAACCTGAACCTAATGGGGAGGATCAAATAACATCTGACCCTGGACCAGCGGTTAGAGGGAACTTCTGCCAGCGCCAACTTAAGCCAGGTGTGAGTAAATTTACAAGGGAACCACTACTCAGTCCAGTAAACTACTCTCAGACATGGCCTTAGTTTAGCATGGAATCGTGATGTCCTTAAAGCTTACAGAATGTACTGTCAATTGAAATGACCAATGTATGTCTTCTTGGACCCTTGAAATGTATTGATGGGACACCTACACCAGCCATGGTTCACACGGACTGTATGAGCCTGCTAAGAGAGagctgtggtgtgtttgtgtgtgtgtgtgtttgttattgtgtgtgagagactgtgctTGGTTCCTTTTTCAAATATTGAGATGATTTTGCCTGGACCCCCCCCCATCTCTGATGATCCTAGCCCGGTCTCGTTGAGGTCCTCCTCAGCCGACTCCCTATAATCTATGGACAAAGACTTGGACAACAACACACAAGTATTCATATGAGTGTCTTGTTTCAGGGAGGACTCTTATTCCTGCGACACCAAGGGAGGACTGTTATTCCGGCAACACCAGCCACAGCGCTGGAGAGAAACTGTTGAAATGTGTGTTGTTGAATGGTCATCCCACTTTCCCAGCACCTCGGTCCGTCTCTGCCAAACCAataaaaacagaaagagaaagaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2462654 lncRNA upstream 32540 13228957 ~ 13230126 (+) True LOC110509665
TU2462638 lncRNA upstream 71303 13191072 ~ 13191363 (+) True G2153767
TU2462434 lncRNA upstream 81148 13181087 ~ 13181518 (+) True G2153583
TU2462433 lncRNA upstream 92536 13169587 ~ 13170130 (+) True G2153582
TU2462431 lncRNA upstream 94568 13167486 ~ 13168098 (+) False G2153582
TU2462796 lncRNA downstream 146556 13483138 ~ 13493716 (+) True LOC110509670
TU2462873 lncRNA downstream 259053 13595635 ~ 13596456 (+) True G2153986
TU2462897 lncRNA downstream 299221 13635803 ~ 13636156 (+) True G2154008
TU2463202 lncRNA downstream 333199 13669781 ~ 13670032 (+) True G2154296
TU2463205 lncRNA downstream 335468 13672050 ~ 13672876 (+) True G2154299
XM_021590681.2 mRNA upstream 2724 13234471 ~ 13259942 (+) True arsb
LOC110509665 mRNA upstream 32345 13226407 ~ 13230321 (+) False LOC110509665
XM_021590677.2 mRNA upstream 174495 13018053 ~ 13088171 (+) False LOC110509661
XM_021590678.2 mRNA upstream 174495 13018054 ~ 13088171 (+) True LOC110509661
XR_002471458.2 mRNA upstream 817345 12438582 ~ 12445321 (+) True LOC110509656
XM_036967340.1 mRNA downstream 40720 13377302 ~ 13442767 (+) True LOC110509669
XM_021590687.2 mRNA downstream 146524 13483106 ~ 13493733 (+) False LOC110509670
XM_021590690.2 mRNA downstream 161888 13498470 ~ 13504029 (+) False LOC110509671
XM_021590688.2 mRNA downstream 161889 13498471 ~ 13504029 (+) False LOC110509671
XM_021590691.2 mRNA downstream 161894 13498476 ~ 13504029 (+) False LOC110509671
TU2462149 other upstream 502176 12759880 ~ 12760490 (+) True G2153316
TU2461440 other upstream 955228 12300792 ~ 12307438 (+) True G2152639
TU2460909 other upstream 1496315 11764224 ~ 11766351 (+) True G2152150
TU2460223 other upstream 1896174 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 2800446 10461753 ~ 10462220 (+) True G2150729
TU2463200 other downstream 331707 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 436126 13772708 ~ 13774088 (+) False G2154391
TU2463316 other downstream 437165 13773747 ~ 13776134 (+) True G2154391
TU2463371 other downstream 469431 13806013 ~ 13813970 (+) True G2154438
TU2463446 other downstream 596666 13933248 ~ 13935819 (+) True G2154512

Expression Profile