RNA id: XM_021590692.2


Basic Information

Item Value
RNA id XM_021590692.2
length 2230
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110509671
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 13498470 ~ 13504029 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGCTAATTCAATGGAaaagtaattattattattatattactgcGTAATTTGATTTAACCGTTTTCTAAATTATTGACGTGATGGAATGGAATTAAAGGAGTCGATTATTCGGTGTATGCTAGTTGTGTGCTTGTTTGAATGGCATTTAGTCTCTGGTTTTATCCAAACTGCAATGTCCACTTCGATGTTTTCACCGTGTTTTTAGAAAATATAATTTTGTAAAATAACCAAATGTTCAACCTACTCTTTGCATGCATTGGCAAACTATAGCCTGTATTCCTCTCTTGCCAGACTTTGACAGGGATGAAGGATGCCGCGGCGGAGCTACTGGGTCACAGGGAGGCTCTAAAGTGCAGACTAGGCGGTGGAGTGGGATCTGACCCCGGCCACTCCGGCGAGCTAGCCCCGGGGCCAGACACCGTGGAGGGGGCTACCATGCTCCCTGGAGACGATATCAACAACGGAGGATCCAACCCTTCCGGCATGCAGGTCAACAGTAAAGAGCAACAGGACAAGCAACAGCAGAATAACTCCAGCCAATCCGGAGGAAGTCAGAGTCAGAAACAGAAGCGCCACCGGACCCGGTTCACCCCGGCCCAACTTAACGAACTGGAGCGCAGCTTCGCCAAAACGCACTACCCAGACATCTTCATGAGGGAGGAACTGGCACTACGGATCGGCCTAACGGAATCTCGCGTGCAGGTAACGGAATCTCGCGTGCAGgTTTGGTTCCAGAACCGACGTGCCAAGTGGAAGAAGCGCAAGAAGACCACCAACGTTTTTCGCAACCCGGGGACGCTGCTGCCCACCCACCACGGCCTGCACAGCCAGTTCAACTCTGCCGCTGCCGCCGCCGCGGCCATGGGCGATAGCCTATGCTCCTTCCACGCCAACGACACACGATGGGCTACGGCAGGGATGCCAGGCGTCTCTCAGCTGCAGCTCCCTCCAGCCCTGGGTCGCCAGCACCAGCATGCCATGGCGCAGTCCCTGTCCCAGTGTAGCCTGTCCGGTCCGCCGCCCAACTCCATGGGGCTATCCAACATGTCGTCGAACGGATCCGGGCTCCAGTCTCACCTCTACCAGAACCCGTTCCCTGGGATGGTCCCGGCCTCCTTGTCCGGTCCCACCAACGTGACGGGCTCGCCCCAGCTGTGTAGCTCCCCAGAAAATGACGTCTGGAGAGGGACGAGCATCGCCTCCCTGCGGCGCAAAGCGCTGGAGCACACAGTATCCATGAGTTTCACTTAGTACCAACCACGAATCCAACGGCCACGTTTTACGCGTTTTTGTTTTTACTTCGTCTTCTTTtatgatttttttgttttgttgttgaacCCATCCAGCCAAATACAGCTGGACAAGGATGTGAACGTCTCCAAGCAAAACAAGCAACAGGAAAACAACAGCCCTATTCCCCAGTTGTGTTGCCAAACTAATACTGAAACCAAACCATTTGAAGGTGGATAAATGGCTAAATGTTTATCTTATTAATTTATGATGTGCATGTATTGATGAcaactttatttattttacatttataaatgccatatttatttatttacttacttatcaacgtatttatttatttatacttttttaatatatatatataacacctCGTTTTCGTTTCATTCCTTTCTAACAAAATAGTAGACCACTGATATTTGCCACTGGAGTTTCTAACAGTTTCCACAGGCCGATGGTCGAGGGTataaaaactgtaaaaaaaataaataagaaagcTCATTTTTATTGTCATCTGCTGCACAGCATGCGACCGATCATGATGGGCCACGGGCATGCGCCGTGCACGTGCAGATATCACACTTGGAAgttttctttttttgtgtgtaaagCGTCAAAAGATGAATAAAACGGAAAAGAGGGAGACACGTGACCATCTCAAAGGAATCACGCAACATGGAAACAAACTTGACTGCATGTGCTGGCCAAGGCAAATGTACGGAAACACCATAAATAAGACAAGAAAATCGACTTGAATATAATCTGTTATATAGGATGTTTTGTGTAGAGGAAGCATTCTTGACTTGTTCCCATTTGGTCAGTTTGTGATATGTTCTAATCTAAATTATTGTATGTGCTTATTATCAAATCTGAATTTCTTAAATGTTTGATCTTATACTGAACAAACCATTTCGTTTCATGGACATGTTTATATCAATTGACTGTAAATGAACAAATAAAAATCATTTTCAATATGTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K24901 OTP; homeobox protein orthopedia

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2462796 lncRNA upstream 5033 13483138 ~ 13493716 (+) True LOC110509670
TU2462654 lncRNA upstream 268623 13228957 ~ 13230126 (+) True LOC110509665
TU2462638 lncRNA upstream 307386 13191072 ~ 13191363 (+) True G2153767
TU2462434 lncRNA upstream 317231 13181087 ~ 13181518 (+) True G2153583
TU2462433 lncRNA upstream 328619 13169587 ~ 13170130 (+) True G2153582
TU2462873 lncRNA downstream 91606 13595635 ~ 13596456 (+) True G2153986
TU2462897 lncRNA downstream 131774 13635803 ~ 13636156 (+) True G2154008
TU2463202 lncRNA downstream 165752 13669781 ~ 13670032 (+) True G2154296
TU2463205 lncRNA downstream 168021 13672050 ~ 13672876 (+) True G2154299
TU2463206 lncRNA downstream 168876 13672905 ~ 13673127 (+) True G2154300
XM_021590687.2 mRNA upstream 5016 13483106 ~ 13493733 (+) False LOC110509670
XM_036967340.1 mRNA upstream 55982 13377302 ~ 13442767 (+) True LOC110509669
XM_021590682.2 mRNA upstream 162167 13262666 ~ 13336582 (+) False LOC110509667
XM_021590684.2 mRNA upstream 162167 13262666 ~ 13336582 (+) True LOC110509667
XM_021590681.2 mRNA upstream 238807 13234471 ~ 13259942 (+) True arsb
NM_001124631.1 mRNA downstream 174484 13678513 ~ 13697486 (+) True crf-bp
XM_021590696.2 mRNA downstream 224783 13728812 ~ 13731111 (+) True LOC110509673
XR_005040354.1 mRNA downstream 241384 13745413 ~ 13747459 (+) True LOC110509676
XM_021590701.2 mRNA downstream 275370 13779399 ~ 13782705 (+) False LOC110509678
XM_036968286.1 mRNA downstream 436158 13940187 ~ 13942428 (+) True LOC110509328
TU2462149 other upstream 738259 12759880 ~ 12760490 (+) True G2153316
TU2461440 other upstream 1191311 12300792 ~ 12307438 (+) True G2152639
TU2460909 other upstream 1732398 11764224 ~ 11766351 (+) True G2152150
TU2460223 other upstream 2132257 11360385 ~ 11366492 (+) True G2151555
TU2459342 other upstream 3036529 10461753 ~ 10462220 (+) True G2150729
TU2463200 other downstream 164260 13668289 ~ 13669170 (+) True G2154294
TU2463318 other downstream 268679 13772708 ~ 13774088 (+) False G2154391
TU2463316 other downstream 269718 13773747 ~ 13776134 (+) True G2154391
TU2463371 other downstream 301984 13806013 ~ 13813970 (+) True G2154438
TU2463446 other downstream 429219 13933248 ~ 13935819 (+) True G2154512

Expression Profile