RNA id: TCONS_00055873


Basic Information

Item Value
RNA id TCONS_00055873
length 2511
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_028846
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30209190 ~ 30249797 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAACAGTTCAGCGGAGGAACAGAAAGATCTGCAGCCATTATTTGAGCTGTGACTGAGTGAAGCACGATGGCCAATGCTAAACAGCTGCTCAAGAACTCACTGGATGAACTGGTAGACGCTGAACTAAAGGAATTTCAGTGGTATTTAATAAATGACCATAGAGATATTTCAAAAGCTGAAATGGAGAATGCAGACAGGTTGAAGACAGTGGATAAGATGGTGTCATGTTTTGGACCAAAAGGAGCTGTGAAGACCACAGTAGACATCCTGAGGAAAATAAACCAGAATGAGTTGGCTGAAGAGCTGGAAAATAAACATAAGCAAGgtgcagttttAGAGACCTGTAAATCTCCTCCTTTTGATTACACAAACACCAGCCGTGAACtaaagaaaaaattaaaggagGACTATGAGAAGATATTGGTTGGTAATTCACAGACGGGTCATAAGAAGTACCTGGAGGATATTTATACTGATCTATATGTGGTGGAGAATGAGACTGGAGGAAGAGAGAGACAGCATGAGGTGATACAGATGGAGTCAAAACACAACCAACAGGATAGACCACTCAAGTGCAATGACATGTTTAAAGTTCAGCCTGACACAGGTCGAAAACACAGAAGAGTCCTGACACTGGGGATCGCAGGGGTGGGAAAAACTGTGTCTGTCAATAAATTCATCCTTGACTGGGCTGATGGAAAAGACAATCAGGAAATAGTCTTCATATTTCCACTGCCATTCCGTAGACTGAATctgattaaagaaaaaaagtaCAGTCTCATAGGTCTGCTAAACAAGTACTTCTTTAGCAGTGGAGAACTGAGCTCTCTTCCTAAAAAACAAGGCAAGGtcatgttcatctttgatggactGGATGAATATCGCTTTAAATTGAACTTCAAAAAGGATGATGGATTTACAGATGTTAATAAGGAAATGACTGTGAGTGAGATAATAACAAATCTCTTAAAGAGACATCTGGTGCCCTCGTCCCTTATGTGGATCACATCCAGACCAGCAGCATCCAGTCTGATACCCCGAGACCTCATTGATCAGGTGACTGAGGTGCGAGGATTCAATGATGAACAGAAAGAGCATTACTTCATCAAAAACAGCAGTCCTGAGGTTGCTAGAAACATCATCGGCCACATCAAGAAATCCAGGAGTTTGTACATCATGTGCCACATTCCCGTCTTCTGCTTGGTCTCTCTCACTGTTCttcagcctctgctgggtcaagaGAGCAATGAAAAAACACCCACAACTCTCACAGAGATGTACATCAACTTCTTACTGTCTCAAaagcaacagatgaaagaaaaatacagaaatgatACTGAATCAGAAGCCAATGCCTGTTCTTTTGATGAAATTGTTCTGAAGCTTGGAAAACTGGCCTTTAAACAGCTGCAGAAAGGACAACTGATTTTCTACAAAACAGATCTGGAGAAGTGTGGGCTAGATGTCAGGCAAGGTTCTGTGTTCTCTGGATTATGTACTCGAATGTTTCAGGAGGAAAACCACTATTCAGGGGAACAGGTGTACAGTTTTGTTCATCTCAGCGTTCAGGAGTTTATTGCTGCTCTCTATGTGTTTTTCacttacaaaaacaaaaaggcaaatcTATTTCTTGATTCCTGGAAAAAGGAACTGAAATGGAAACTCTCTGAAAAGCCCCTGTTTAAACTTCATACAGCTGCAGTCAAGAAGACTTTACAAAGCAAGAATGGACACCTGGACCTTTTCCTCCGGTTCTTGATGGGTCTCTCTCTGGAGTCTAATCAGAGTGACATGAAGGAGCTTCTGCCATGGCTGAAGCTCAAAACTGACATGATCAAAGACACGACTGactatatcaaaaagaaaatcgAGGAGGAAAATTCAGCAGAGAGAACCATCAACCTCTtccactgtctgaatgaactgaatgaTGACTTTGTGGAGGAACTCCAGAAGAGTCTGAGCTCTGGAAATCTTACAGCACAGGATCTGTCCTCTGCTCAGTGGTCGGGTCTAGTTTTTGTGCTCCTGATGTCAGAAGAGATTCAAGAGAAGTTTGAACTGCAGAAATACAGAAGATCTGATGAAGCACTGATGAGACTGATACCAGTGGTCAAAAACACCACAAGAGCACTGTAAGAGTTTTCTGTATACACGTATGCCCGTTTCACACATTGATTTGAGTTATATTCATGCAGTGCAAAAACAGCACAGACTTTTTGTGcttttacataaaatatgtattacTGATTACCTGCTGTATACATTATCAGTTCTCCTTATATACTTCATTATCAGACATTCTTATCAATACTTTCCTAATTTTGTTTTAAACCATACAATAATATAATCTTCCCTGAAcacatttaaatgattaactatagaCGGTGTGCACTTCAAAACTGGGAAgggaaattaaataattgatttaaagtTTTTATAAATGATAACTAATGATTAATTATCACACAATTGTcaactaaaaaataattttatgtttattttgtaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000168249

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055867 lncRNA downstream 81566 30106649 ~ 30141117 (-) False XLOC_028844
TCONS_00058238 lncRNA downstream 81967 30107746 ~ 30140716 (-) True XLOC_028844
TCONS_00055866 lncRNA downstream 110461 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00058237 lncRNA downstream 117740 30104185 ~ 30104943 (-) False XLOC_028844
TCONS_00058236 lncRNA downstream 255549 29965278 ~ 29967134 (-) True XLOC_028842
TCONS_00058239 lncRNA upstream 66006 30315803 ~ 30319511 (-) True XLOC_028848
TCONS_00055878 lncRNA upstream 113965 30363762 ~ 30364502 (-) True XLOC_028851
TCONS_00058240 lncRNA upstream 156057 30405854 ~ 30407827 (-) True XLOC_028852
TCONS_00057363 lncRNA upstream 291202 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057362 lncRNA upstream 291202 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00055870 mRNA downstream 48095 30147796 ~ 30174588 (-) False XLOC_028845
TCONS_00055871 mRNA downstream 48095 30169227 ~ 30174588 (-) True XLOC_028845
TCONS_00055869 mRNA downstream 68057 30145984 ~ 30154626 (-) False XLOC_028845
TCONS_00055868 mRNA downstream 68773 30145984 ~ 30153910 (-) False XLOC_028845
TCONS_00055865 mRNA downstream 167487 30048713 ~ 30055196 (-) True XLOC_028843
TCONS_00055875 mRNA upstream 12602 30262399 ~ 30269748 (-) True XLOC_028847
TCONS_00055876 mRNA upstream 98879 30348676 ~ 30349370 (-) True XLOC_028849
TCONS_00055877 mRNA upstream 104256 30354053 ~ 30362840 (-) True XLOC_028850
TCONS_00055879 mRNA upstream 159953 30409750 ~ 30422325 (-) True XLOC_028853
TCONS_00055880 mRNA upstream 178671 30428468 ~ 30440116 (-) True XLOC_028854
TCONS_00055851 other downstream 1367006 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1680548 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1790238 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3081380 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3123398 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 705544 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 725119 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 735559 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 742084 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 743389 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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