RNA id: XM_021590711.2


Basic Information

Item Value
RNA id XM_021590711.2
length 2749
RNA type mRNA
GC content 0.43
exon number 6
gene id slc31a1
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14015042 ~ 14028322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGTCGCCTGCTAAGCTACTACATGAAAACATCCGTGCTACGTCAACATTTTCCTGCATTGTCAAATGTCAGGCTTGCTGTGCTTTCGGCGTTTTGCCAGTAGAATAAACGCGAGTCTGAAAGTTCATTTGAAAGCTCATGGTTAATGATTAGGTTGTGAGTTATCTTGGCCCAAGAAAATCACGCTAGAACCACAGCGTTTCTAAACGTACTGTACTGTCGACGTTGCTGCCACCGTGTTATCTATATTGTGAGGAGGACAGTGACAGTATCCAATGGGCCAGGCTGTCCTCCAGCTATGCTGCTGTAGTTGGCATCAACCCTACATGACTGAACCTTGTTTGCCTGTCCTACAGTACAGATGAACATGGACATGCACCATGATCACCACGACCACGGCACCATGGCTCCTCCCACGGGGACAGACTCCCATGGGGATGCAGCAGTACACAGTGCAGGaggaatgatgatgatgatgCAAATGACCTTCTACTTTGGCTACACAAACGTGGAGCTGCTGTTTGCCGGTCTTGTCATCAACACACCTGgagAGATGGCAGGGGCCTGCATTGGTTGTTTCCTGCTGGCTGTGCTCTACGAGGGGCTGAAGATCGGCAGGGAGTTCCTGTTGAGAAGGAACCAGGTCAACGTGCGCTATAACTCCATGCCTGTCCCAGGAGCAGATGGTACCATGCTCATGGAGACCCACAAGACTGTAGGccAGCGGATGCTGAGTCTGTCCCACTTGCTGCAGACGGTGTTACACATCATCCAAGTGATGGTCAGCTACTTCCTTATGTTGGTCTTCATGACCTACAACGCTTACCTGTGTATCGCCGTGGCAGCGGGAGCCGGGGTGGGATACTTCTTATTCAGCTGGAAAAAGGCTGTGGTTGTTGACATCACCGAACACTGTCACTGACACCCCCATCTGGTCTATTCATCCTACCACACAcgtaaaacacacacatataggCATTCTCCTTTCAATCATCATGCAtcgttttttttttgcatgtatCACATTTGGACAGTTCCCTTTGTCACACTAAAGCTTGATGGTAAATCTGAATTATGACCATGTGCTTCCTGTCTCAATCTCCACGTCTCTGTCAAAAGAGCTGAACGTTCACTCTTCCCCCAGTCGTGCCATTCTCAATCAGTATTTTTATTATTGCGCAACAATCGGTGAACGTTCATCCTTACAGCATCGGACCTAGGGTTTTCTGCTCATACAGGGCATTTGCGACATTTACAACCACTTTCTCCTTGAAGAACAGTGTGCTGGTACAAGCAGGGAGTAGTTATATGAATAGGGCCTATAGTATCTCCTGACCAGGGAACAATGCTGGGCCCTAGTTGAAGCATTCTGAAGCCAAGTCCTCTGCATTTCAGCTGACTGTCCGATGGGGGTCATACATAATCAGTGTCTCACAACGGGAGTCAAAGGTCATACTTGAGATTGGCTGTATAACTGAGCCTTAGTAAACCCTTTGCCTTAAAGGAGGAAAACATGTGACAGCCTAGGCCAACTGTAGACAGGACCCATAGTCTACTGATAAGTGCCAGCACCATTTTAAAGAAGTTTGTCCTTGTATTGGTCATGTGATTATATGACAACCCTTAAAACCATCATGATACACACTGCTATACAATGTTCAATTTtggatagatttttttttttttttaaactcagtaTTTACAAATAACTCTTCACTTAAGAGTAGGCTTGATCTGACCCATACATGTACAATAACAATTGGCTCTTGCACATTTAAGAAGCCAGTGTAAATAGAAATATATGTACATGTCAAACAAACCTACTGCTAGTATCACCTCCAACGAAGATAATtttacatctaaattcaagtgtCTGCATTTCTAAATCTTCACTACCATAAATTGTTGCTGGCCAAATCTTTAATTTGCTTGTTTCAAGAAACTAATTACTGTTGAACAGATTACTGGGTCTAATCTGAGCACATAAGGAGGTCCCTAAAAAGGGTTAACTTTATCACTTCATGAAGTGGGATTCCCCGCTATAATTTGACAGTAACTTTTGGTGTGTTTATTCAATAGGCTTAAAGTAGCACATGTCAACACAACATGGATACTAGTGTCCTTATTGGAGCAAGTGCTCAGGTCCCAAGGACAAGCAGATAACTCTGGGAAAGTAGGAGGCTGGATCCAGTGCTTTCTCAGACTGGCCTAGTAACACATGATTTCTGCACTACTCTGTGACCCATCGGTGCTTAGGCCACACACTACAGACAGTACATACTTTGACAGAAGGGTGATTTCTATGAAGTAGAACCTAAAAGAGAAAATATTTCCCTTTTAGGTATGTCTTTTTAGTTTGTTAAtggtttactttttttttttttagataaatgACTGTAGTAAATGTTTATCAGTTGCCTGAGTGACATTGTGTTGTGCCTGGTTTGGGGATCAAATTCCTAGTTGCTATAACTGGATTTAACAGCCACGTGTTCTCATTACATTACAATAAAGCCAGGGACATTAGTATATACTTGAACATAACTGTTTCTGCTTTACCATGTGGGATCATGTATAAAGAGGATATATTAGTCTACTGTACAAATGGAGTGTTGAAGTAAATTGGCCAAAAACAAGTGGGAATCTGACCACCACTCCAGCATCGGTGTGAACATGTCTGTATAGTTTTACATATTTATAGTGCTGTAATCTTTTTAGAGAAAACAAGTAATAAATTGTATCATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463506 lncRNA upstream 1651 14013216 ~ 14013423 (+) True G2154565
TU2463505 lncRNA upstream 1993 14012881 ~ 14013081 (+) True G2154564
TU2463469 lncRNA upstream 33423 13946469 ~ 13981651 (+) True G2154533
TU2463448 lncRNA upstream 79255 13915670 ~ 13935819 (+) False G2154512
TU2463514 lncRNA downstream 15848 14044170 ~ 14044421 (+) True G2154573
TU2463515 lncRNA downstream 16131 14044453 ~ 14044814 (+) True G2154574
TU2463516 lncRNA downstream 16643 14044965 ~ 14045498 (+) True G2154575
TU2463700 lncRNA downstream 41931 14070253 ~ 14071153 (+) True G2154750
TU2463780 lncRNA downstream 172561 14200883 ~ 14201383 (+) True G2154823
XM_021590705.2 mRNA upstream 4906 14000254 ~ 14010168 (+) True atp6v1g1
XM_036967425.1 mRNA upstream 18621 13958633 ~ 13996453 (+) False LOC110509680
XM_036967427.1 mRNA upstream 18621 13958634 ~ 13996453 (+) True LOC110509680
XM_036968286.1 mRNA upstream 72646 13940187 ~ 13942428 (+) True LOC110509328
XM_021590701.2 mRNA upstream 232369 13779399 ~ 13782705 (+) False LOC110509678
XM_021590714.2 mRNA downstream 7000 14035322 ~ 14041282 (+) False prpf4
XM_021590713.2 mRNA downstream 7001 14035323 ~ 14041282 (+) True prpf4
XR_005040827.1 mRNA downstream 11014 14039336 ~ 14039471 (+) True LOC118945712
XR_005040826.1 mRNA downstream 12112 14040434 ~ 14040567 (+) True LOC118945711
XM_021590723.2 mRNA downstream 143477 14171799 ~ 14175996 (+) True LOC110509688
TU2463446 other upstream 79255 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 201104 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 238940 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 240986 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 345904 13668289 ~ 13669170 (+) True G2154294
TU2464720 other downstream 990305 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2322395 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 3161022 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 3161181 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 5032221 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile