RNA id: XR_005040827.1



Basic Information


Item Value
RNA id XR_005040827.1
length 136
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118945712
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14039336 ~ 14039471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAGGACTGAGAAGGTTTAGCAGCTTGTTCTGTGCTGTTATAACTGGTTATAACCTCCTAAATGAACATAAGTCAGATGCGACAAACCGGCTACATGTGACACATTAGAGCTGGCGTTGTGTTTGTGTACAGATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2463506 lncRNA upstream 25913 14013216 ~ 14013423 (+) True G2154565
TU2463505 lncRNA upstream 26255 14012881 ~ 14013081 (+) True G2154564
TU2463469 lncRNA upstream 57685 13946469 ~ 13981651 (+) True G2154533
TU2463448 lncRNA upstream 103517 13915670 ~ 13935819 (+) False G2154512
TU2463514 lncRNA downstream 4699 14044170 ~ 14044421 (+) True G2154573
TU2463515 lncRNA downstream 4982 14044453 ~ 14044814 (+) True G2154574
TU2463516 lncRNA downstream 5494 14044965 ~ 14045498 (+) True G2154575
TU2463700 lncRNA downstream 30782 14070253 ~ 14071153 (+) True G2154750
TU2463780 lncRNA downstream 161412 14200883 ~ 14201383 (+) True G2154823
XM_021590708.2 mRNA upstream 11014 14015042 ~ 14028322 (+) False slc31a1
XR_005040826.1 mRNA downstream 963 14040434 ~ 14040567 (+) True LOC118945711
XM_021590723.2 mRNA downstream 132328 14171799 ~ 14175996 (+) True LOC110509688
XM_021590725.2 mRNA downstream 175651 14215122 ~ 14231237 (+) False LOC110509690
XM_021590726.2 mRNA downstream 175937 14215408 ~ 14231237 (+) False LOC110509690
XM_036967477.1 mRNA downstream 176992 14216463 ~ 14231237 (+) False LOC110509690
TU2463446 other upstream 103517 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 225366 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 263202 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 265248 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 370166 13668289 ~ 13669170 (+) True G2154294
TU2464720 other downstream 979156 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2311246 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 3149873 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 3150032 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 5021072 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile