RNA id: XM_021590723.2


Basic Information

Item Value
RNA id XM_021590723.2
length 1574
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110509688
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 14171799 ~ 14175996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCAAAATAATGTGCGGAACAGTTCACCATCACGAACGAGGCTGGGTGAGTAAGTCACGAAGGCCTGCATGATCCCTCCCGACTAGAATGCGATTTCTACTGGACTTTGCACTGACTTAAAGAGAGGTTTTTCATTCTCGGGATAACAATAAAATCTTGTAGAAACATGCCTGAGAATAACAACCAGCAGCGCCAGGTtcaggaggaggcagaggaggtgaAGGTCATTATGATGGACAACATGGAGAAGACTGAGGAACGCAAGGAGAAAGTGCAGGACCTTGACGAAAGGGCTGGGGAACTGAAGagCAAGTCCTTCCACAAGACCGCAATGAAGGTGCAGAAGCAGATGAAATGTGACAACGTCAAGGCCTCCTGGAAGCTCATTGCTGTTGTTGGAGCCATGGCCGCGATTATCATTATAGTTGCCATCATTATGTGGGTCAACAAAAAATCGAGCCCTGAAATCACACATGAAAGAGTCATTAACCCAATGCACGAAAATGGCATTACACCAACAACCAATGGGCCTGGGATGTAGGCTAAACCAGGACCAATATGGCTGAAGAGGAAACAAATAGGGGACACTAATCGAAAGATACTACTATCGGTCAAAAGTCCCCCCCAATAAAATTCTGGAGTTGATGCTTTACTTGTCCTCATACACCTATAGGATACTCCTACTTATGCATCAGGGAAGCGATAATGTGTTAGGTGCTCAAATAATCCCATTATTCAGAAtacttttattatttattatgtaTTACTGGACTTATTGGGATACATTCTATTTCTTTTTCTTTAttcaacaaggcaagtcagttaaaaacaaattcttattttcaatgacggccaaggaacagtgggttaactgccttgttcaggggcagaacgaccaatttttaccttgtcagctcggggatttgatcttgcagcctttcggttactagtccaactcgctaaccgctaggctacctgccaccccataattAAGGTTAACCTGAATAACCTCACATATTCAATGGTACAATTCATTTACCAAACAGTTATGTCCAGACATAAATGTGTTTTAAGATATTGGCTCTTATTTTTACTGGAGGTGCACATCATTTTCTCTCGGTCATTCTTGAAGATTCCTTATCGGCTAGTTGATAGATGTCGCGTGTTGACAAAACAAACAAGAATTGCCATATATTAACATGCAACACAATTCTCTTAAAAAGAGACTAAAGTCCTCATAATAatgcatttttaaaaatgttacatTTGATTCATAGTCACATTAAATAATTGACAACAgcaataatacatttttttttgctgtaAGCTATGGAGTTGTCACCCTTTTATGTCACTTTTAAAACAGTCGGCAGGAACTCCCCAATAGACAGCTGTCTTGTTCTTTGAACAGATTCATGGAGTATAATAAAACACTTATTGATTTCATCTTGCATTTTAATCAAGTAAATTACAGTTGATCAGAAAATGTACATGAACCCTGATTGCTCAAGATTTCAGTGGAAATATGttattttgacatttttacaaaataattaaaaatgaaaagctgaaa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2463700 lncRNA upstream 100646 14070253 ~ 14071153 (+) True G2154750
TU2463516 lncRNA upstream 126301 14044965 ~ 14045498 (+) True G2154575
TU2463515 lncRNA upstream 126985 14044453 ~ 14044814 (+) True G2154574
TU2463514 lncRNA upstream 127378 14044170 ~ 14044421 (+) True G2154573
TU2463506 lncRNA upstream 158376 14013216 ~ 14013423 (+) True G2154565
TU2463780 lncRNA downstream 24887 14200883 ~ 14201383 (+) True G2154823
TU2463749 lncRNA downstream 55022 14231018 ~ 14231240 (+) True LOC110509690
TU2463787 lncRNA downstream 57570 14233566 ~ 14233913 (+) True G2154830
TU2463789 lncRNA downstream 59076 14235072 ~ 14235351 (+) True G2154832
TU2463791 lncRNA downstream 60422 14236418 ~ 14236706 (+) True G2154834
XM_021590714.2 mRNA upstream 130517 14035322 ~ 14041282 (+) False prpf4
XM_021590713.2 mRNA upstream 130517 14035323 ~ 14041282 (+) True prpf4
XR_005040826.1 mRNA upstream 131232 14040434 ~ 14040567 (+) True LOC118945711
XR_005040827.1 mRNA upstream 132328 14039336 ~ 14039471 (+) True LOC118945712
XM_021590711.2 mRNA upstream 143477 14015074 ~ 14028322 (+) False slc31a1
XM_021590725.2 mRNA downstream 39126 14215122 ~ 14231237 (+) False LOC110509690
XM_021590726.2 mRNA downstream 39412 14215408 ~ 14231237 (+) False LOC110509690
XM_036967477.1 mRNA downstream 40467 14216463 ~ 14231237 (+) False LOC110509690
XM_036967369.1 mRNA downstream 113216 14289212 ~ 14396808 (+) False LOC110509691
XM_036967370.1 mRNA downstream 113216 14289212 ~ 14396808 (+) False LOC110509691
TU2463446 other upstream 235980 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 357829 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 395665 13773747 ~ 13776134 (+) True G2154391
TU2463318 other upstream 397711 13772708 ~ 13774088 (+) False G2154391
TU2463200 other upstream 502629 13668289 ~ 13669170 (+) True G2154294
TU2464720 other downstream 842631 15018627 ~ 15093949 (+) True G2155696
TU2466780 other downstream 2174721 16350717 ~ 16353665 (+) True G2157602
TU2467775 other downstream 3013348 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 3013507 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 4884547 19060543 ~ 19065772 (+) False LOC110509751

Expression Profile