RNA id: TCONS_00058240


Basic Information

Item Value
RNA id TCONS_00058240
length 1924
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_028852
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30405854 ~ 30407827 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGACAGTGGTAGAGAGGTTAACAGATGAGCTTCTCCAACAAGAACTGTGCGCAGTCCCCCTGTCACTTGCCACGTCAGATTCAACACTCAGACTAACAAATCCATCTGTTGTGAGCATAGGCACCATCATTGATGGGATGGCCTTAGTAAGAGCAATCGTAAAACCTGTAAATGCATAATCTTTTGGAGATTATTCTGATATTTAAATGCAGATAGTGACTGGTTATCTACATAGGAACATTACTAGAGTTGATCTAGTGTTTGATCAGTACCAACAGAACTCCATAAATGGTGGAACAAGAGCAAAACGTAGCACTACCACCAACTATTTGTGGTTGGCACATGAAAGATGGTGTGCTGGTCCCCAAGCTTTTGACGAAAGAACCTTTACAGGCCAGATGTTTGAAGCTCATGATCTTTGGGTGCAAGGAAGGTGGAACTCACTGCAGTGTCAATGTCGAAAAAGTGGAATGTATTGTTGCAGAgcatgtggatgtgtgtgtgcagcttgGTGCAAGAATACTCGGGTACCTACATAATTATATTCGAATAGGTTTAGGTTTTGCCCTTTAGTGTGATCCAGGCGCTCTATTGTTAAAGTAAAAGCTTCCTCTTCTGTTATGTCCCTGTCCAGGACTCTGACTGAGTATTTGATCCCTGAATGCCTTCTAAAAGCTGGTCACCTTCCCATCTCTCTGTTGAGTATGACAGATTAGATAAGGGAAAAAGGTCACCAGCAGGGTTTAATGGAAATTACCATGCTTCCTAGGAAAAATTAATCAAGATTCTGTAATTTTGTGATTGTTATAATTAAACAAGAATCTTTTCTTAAATAGGTTGCctgaaatattttatgtcatTTCCAAACAACTACACAGTTACAGTATTACATCAAAAATATTAGCAGGTACTCCAAATTCTAGTAcaaaagaattctggcccagatttggcataaagctgggacaGCAGGCATTTAtttggcactggcatacagcattcGGGCCAAACATGGcttgggtttggcagaggtggcatcgtctttaaggcagcacacaagatttgggccagatgtaaaatgtagtatttggcccagattttaaaaattgaaatgtGGGCCaggtgagtttggccagtcttgacccacatttaaaatatattaaaataatttttgtgtagaaaaaaaaaaactgtacaaatcaGGTCATTTTGAGAAAAAAGCAGGCCCATAGTGTGTAGTGTGCCTAAAGTGCAAcacttcatgggtttatcaatttcattgcaattatGACACACCAACCAATCTGGCCCTGtgtatgagttattaacttggctgagacttggctcagatatagtctgtgtttgaCTCTTGTCTGgtagccagatttggtccagtcatgtaccataattTACTGCAgaatgtgggccaagcaaaacctgattgtgtgggccagagaaattttgtgATGTGGGAAGACTTGAGACAGGAGTTGAATTGGAAggaatttataaatgtaataatatgtaaaaaaataaatataattggtTTTAGAGCCAAGTACATGAAAAAGTAAAATAGGAGCAAAGACtatgatttaaaatgttaaatttccGCCTGGACATGAAAGTCCTAAAACTTGTGCAGTGTTCCACTGTCTTACACTACAAATTGTAAACTTGGCATGAATCATGCACCTATATAGTAGTACTTATGGAGTAAGGTTTTGAGCTAATATCTTATGTTTACAAGCTGATATTCATTTCAAAGTCTGTTTTTCTCtgaacatttacacacatccCATGAATGTAAGCTTTCATTTGATACCgacattatatttacattacattatatttgtgGTTTATGTAATTCCAGTAATATCTacatttactgtatgtgtgttgtgttgagcaaataaataacaaaaa

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055878 lncRNA downstream 41352 30363762 ~ 30364502 (-) True XLOC_028851
TCONS_00058239 lncRNA downstream 86343 30315803 ~ 30319511 (-) True XLOC_028848
TCONS_00055867 lncRNA downstream 264737 30106649 ~ 30141117 (-) False XLOC_028844
TCONS_00058238 lncRNA downstream 265138 30107746 ~ 30140716 (-) True XLOC_028844
TCONS_00055866 lncRNA downstream 293632 30104535 ~ 30112222 (-) False XLOC_028844
TCONS_00057363 lncRNA upstream 133172 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057362 lncRNA upstream 133172 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057364 lncRNA upstream 133172 30540999 ~ 30546286 (-) True XLOC_028856
TCONS_00057365 lncRNA upstream 169649 30577476 ~ 30581395 (-) False XLOC_028857
TCONS_00057366 lncRNA upstream 171270 30579097 ~ 30581395 (-) True XLOC_028857
TCONS_00055877 mRNA downstream 43014 30354053 ~ 30362840 (-) True XLOC_028850
TCONS_00055876 mRNA downstream 56484 30348676 ~ 30349370 (-) True XLOC_028849
TCONS_00055875 mRNA downstream 136106 30262399 ~ 30269748 (-) True XLOC_028847
TCONS_00055873 mRNA downstream 156057 30222683 ~ 30249797 (-) False XLOC_028846
TCONS_00055879 mRNA upstream 1923 30409750 ~ 30422325 (-) True XLOC_028853
TCONS_00055880 mRNA upstream 20641 30428468 ~ 30440116 (-) True XLOC_028854
TCONS_00055881 mRNA upstream 113823 30521650 ~ 30528239 (-) True XLOC_028855
TCONS_00055882 mRNA upstream 299455 30707282 ~ 30712588 (-) False XLOC_028858
TCONS_00055883 mRNA upstream 299471 30707298 ~ 30712160 (-) True XLOC_028858
TCONS_00055851 other downstream 1550177 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 1863719 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 1973409 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3264551 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3306569 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 547514 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 567089 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 577529 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 584054 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 585359 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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