RNA id: XM_036967935.1


Basic Information

Item Value
RNA id XM_036967935.1
length 2755
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC110509722
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 16987866 ~ 17038702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAATGAAGAGagcatgagcgagagagagagagagagagagcgtcacAGTGTTTTCGTTCAGTACACGTTACCTCACACGCACTCTGAAGACACAGCAGCGAGAAAGGGCACCCGTATCTATCCGTTGCATTACTAGCTGGTTTCTTTCAGAGAGAGCTCTGCAGACGTGAAAATACCACGATTACTGCCGAAGTGGAACTCTCGCCAGTTGCCACAGTCTTTCCTGGATTCCCTTCAACCTTCTCGCCGCATTTCTCTATCCTAGGTTTTCTGGAATGAGCTGTTTTCCTGCTTGCGTCGTTTCCATGTCAGCATGGGAACTGCCGTGTCCAAAAGGAAGAATATAAGAAACGATGCGACATCTTCCGTGGCAGCAAAAGTTAGAGCAGCGCGAGCGTTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCGAAACGGCTCAGCCCATCTCCTGTCTGACACGTTTGTTGTCCCAGACTCTGTCTCCCCTGGCGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGCTCTCCGGCCTCCCCTGAGTCCAGCCTGGTGAAGCATCCGCTGGACCACCTCCAGCCCCCGCccgcctccatcaccaccaccaagACCCGCCTGTCTCTGGAGCGCAGCTTCTCGGCCGAGGAGGACCAGCAGAAGTGTGTGGAGTGCGCCCTGCAGCCCGCCCGCGTCTACACCATCACCGGAGAGCACGGTATGCTGGGTAGCAACCGGGGCAGCAAGGAGAGCCTGGAGCTGGAGCTGCTGAAGGGGGCGTCACCCCTGGTCcagccctccacctccccctcctccacctcctcctcctcacccaccCAGCACCACCTCCGTCACGGTCACCGCAGCAACACTCACCGCGATGACGGGAGCCATCGTCACGGCAACCCCGTGGCCGGCGGCAGTGGCAGCAACCATCACACTCTGAATGTTACTGGTGGGGGAGCCTCCCACCATGGTCACCATGGCAGCCACCACCACCTATCCCAGCAGCCTCTGTCGAGCTCGGTCAGCGCGCAAAACATCCGCAGCTGGGGCGAGGGGGGCAAGGGGGACTCACGGGAGGACTGCAGCCTCAATGTGGTCTTGGACTCTAGTGGGGCCCCGTCCCGTAGCCAGGGCTCCCTGGATCTAGAGAGCTCCCGCGAGGCAGAGGACAACAACTGGTACCCTAAAGACAATATGTTTAGCTTTCAGACTGCTACTACCACCATGCAGGCGATATCGGCTTTCCGGGGATTTGtgcagagaaagaggagagagagggagctggatTCGGCTGAAGTCATCCAGAGGAACTTCCGGAAGCATCTCAGAATGGTGGGCAGCAGGAGGATGAAGGCACAGACATTTGCCGAGCGTAGAGCGATGAGTTTCAACCGCTCCTGGAGTGACCCCACCCCTGTCAAGAATGACTCTCCACATGACCCCAGAGACAGTGGGGACCTGCCTGCCTCGTGTGGGACCCTGGATGAGGGGGAGCGTGAGGAGCTagactgggaggaggagagggagatggagagacttGCCTGTGAGGGAGATGACTTCATCCCACCCAAAATCATGCTGATCTCCTCCAAAGTCCCCAAGGCGGAGTACGTTCCCACCATCATCCGCAGGGATGACCCCTCAATCATCCCTATCCTCTATGACCATGAACATGCTACGTTTGATGATATCCTCGAGGAGATTGAGAAGAAGCTAACAGCCTACAGGAGAGGCAGCAGAATCTGGAGGATGCTCATCTTCTGTCAGGGAGGTCCAGGGCATCTGTACCTGTTGAAGAATAAAGTGGCCACATTCGCCAAGGTGGAGAAAGAAGAGGACATGAGCCAGTTCTGGAGGAGGCTGAGTCGGTTTATGAGCAAAGTGAACCCTGAACCCAACCTCATCCACATTATGGGCTGCTACGTCCTGGGAAACCCCAATGGAGAGAAGCTGTTCCAGAAGTTGAAGAACCTGATGAGGCCTTACTCCATCGAATTCGAGTCGCCACTGGAGCTGTCTGCGCAGGGAAAAGAGATGATTGAGATGTACTTTGACTTCCGTCTCTTCCGCCTGTGGAAAACTCGCCAGCACTCCAAACTCCTGGACTACGAGGATCTTTTATGACGGGGCTCCAAGTCAAGTCCGTCCTGTAGCATACATGCAGTCTATACTGGGACAGGAGGACCTACTGAACACCACTGCTCAACTCAACCCTACTGCTCAGCCCCACTGTAACATCTATCACACCTGCTTTCAtccaggagaggactgggagaggggggtgatgaagaggaggacgaagagaAGAGGGACAGGAGTGATAGAGAGGTCGAGGAGGAGGCGAGGGGTGACATAGCAGCTGTCATGGTGCTGTGTGTGTCACCCATTATTTATTTCAACCCGCCTCTTCACCGCCTTCGCAACCACTAAGGTTTGAGGATCAAAAAGAGAGACACCCAAGCAGAAGGGATGCTAGAAGGACAACAAGAACtgaagatggagagaaagagtgaacgAGTAGAACGGGAGAGAGATCTTCTgtgctcttgctctctccctttaTGAAACGAGGAACAAAAACATGTATTATCATGTTTGAGGTGCTCATAGCACTTTAAAGGGCAATTGTCTGGTTCTGTTCTGGTTGGACCTCTCAGAGAAATCCGGATTGGAAAAGCAAAATTCAATCCATATGTaggtgtgtatgtacagtggggcaaaaaagtatttagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2467548 lncRNA upstream 30468 16957039 ~ 16957398 (+) True G2158312
TU2467198 lncRNA upstream 102492 16885059 ~ 16885374 (+) True G2157996
TU2467167 lncRNA upstream 109835 16812866 ~ 16878031 (+) True clic3
TU2467089 lncRNA upstream 286286 16677948 ~ 16701580 (+) True G2157891
TU2467077 lncRNA upstream 320893 16661230 ~ 16666973 (+) True G2157881
TU2467694 lncRNA downstream 24801 17063503 ~ 17063912 (+) True G2158420
TU2467701 lncRNA downstream 31985 17070687 ~ 17093509 (+) True G2158427
TU2467740 lncRNA downstream 97543 17136245 ~ 17136879 (+) True G2158464
TU2467743 lncRNA downstream 158020 17196722 ~ 17197415 (+) True G2158467
TU2467735 lncRNA downstream 159757 17198459 ~ 17200589 (+) True G2158459
XM_036967284.1 mRNA upstream 38791 16900728 ~ 16949075 (+) False LOC110509336
XM_036967282.1 mRNA upstream 38791 16900731 ~ 16949075 (+) False LOC110509336
XM_036967283.1 mRNA upstream 38791 16900731 ~ 16949075 (+) True LOC110509336
XM_021590783.2 mRNA upstream 109835 16872841 ~ 16878031 (+) False clic3
XM_021590781.2 mRNA upstream 128060 16855976 ~ 16859806 (+) True pou5f3
XM_021590800.2 mRNA downstream 352393 17391095 ~ 17394366 (+) False LOC110509731
XM_036967972.1 mRNA downstream 352459 17391161 ~ 17394366 (+) False LOC110509731
XM_036967971.1 mRNA downstream 352507 17391209 ~ 17394366 (+) True LOC110509731
LOC110509337 mRNA downstream 357148 17395850 ~ 17399424 (+) True LOC110509337
XM_021590803.2 mRNA downstream 361541 17400243 ~ 17406305 (+) False LOC110509732
TU2466780 other upstream 634201 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 1893917 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 3052047 13933248 ~ 13935819 (+) True G2154512
TU2463371 other upstream 3173896 13806013 ~ 13813970 (+) True G2154438
TU2463316 other upstream 3211732 13773747 ~ 13776134 (+) True G2154391
TU2467775 other downstream 150642 17189344 ~ 17191098 (+) False G2158499
TU2467776 other downstream 150801 17189503 ~ 17191128 (+) True G2158499
TU2470138 other downstream 2021841 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 2021841 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 2021841 19060543 ~ 19065772 (+) True LOC110509751

Expression Profile