RNA id: TCONS_00057365


Basic Information

Item Value
RNA id TCONS_00057365
length 2079
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id XLOC_028857
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30577476 ~ 30581395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gccggagcgtgagtgtggtatatatacacgagagctgatgagttgcacctggaccgtaatcagtgccaggtagcagggcttatgggattttgagtccgtgagtcgaatcagaattctggcgatggttccctctggtggtgcacaagagggttggcatcgccctcatttacaacacacactgaaaaaagtgatttTGGAGAGCGGTAAATATAATCTGTGGAAACCATATAAAATTTACTTGATTATTGCAGCCAGCCAAGGAATTCAAAAGTAATGGGTAAATTCTACATATGCTACCCATTCGTCAACAGTAACAACCATCACATAGAAAAATTCAGTAAAGTATACCCCCAAACCGTGAGTTTATTGCTTGAAATTGCGCATGCGTCAGCCCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACTAACAGCAGAAATTAAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGAGCTGACACATCCACACACGTCCACATCACAAGTGTATCCTGTAAAGGTATGTAagttttccaaataaaataaatcacattgtCCTTAAAGGTCTTTAACGAAAGTCTTCAGTTATGGAAAAATGAAATGGAAAtgcaatttataaaataaattaaaaaatgaataaaaccttCTCTAGCCAAAGAATTGAAGTGGTCAGTCTCAGCCCCtcttttggtggttttaaaaaaaGGTATTATTCACTGAGGCTCAggtgaaaatgtttaaaatagattttaaataataatattttttctttcaacTAAGATACTTTCATGTGATATATATGAGATCTGGTTTgtgatttaaaataacatttttggtcCTTTTACTTCCTAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTTGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTtaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTACAGTGATCGGGGGAAAACAAGTGATGGAAGGATGGGGAAGCCAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACCACTGATGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTCTTATTTGAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCttcacacacagacaaagacCCATCCACTGTCTCTCAGCCCTCTCCATTTCTCTACGTTTtcccccatattgacagaaaaggAATACTAAAAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTccccatttgtttgtttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAGAATAAGTGGCCTTTGAAGTTTTGTATGCAAGTAGCCAATTACCagaaaaaacttttgaaaatgagtatagtgagttataaaacaggtttatttgttcattgttgtGTGAAGCTGTTGTACTTTATTTAGTACTCTTTTCTGTGTTTTAATAATTTGGTGTCCTAAAACgggtatatgttttattattcaacATTATTGACACATTTGATAGATCAgtgagttataaaacaggtatatACTTGAAATGTTGTGTGAAGCTGTTGTGCTGCACTATATTTTGAGTGTGTTTTAGGATTTTTTTGAATAAAAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057364 lncRNA downstream 31190 30540999 ~ 30546286 (-) True XLOC_028856
TCONS_00057363 lncRNA downstream 32060 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00057362 lncRNA downstream 32060 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00058240 lncRNA downstream 169649 30405854 ~ 30407827 (-) True XLOC_028852
TCONS_00055878 lncRNA downstream 212974 30363762 ~ 30364502 (-) True XLOC_028851
TCONS_00058241 lncRNA upstream 478962 31060357 ~ 31062275 (-) False XLOC_028859
TCONS_00058242 lncRNA upstream 478962 31060357 ~ 31062771 (-) False XLOC_028859
TCONS_00058243 lncRNA upstream 478962 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00055896 lncRNA upstream 514434 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00055897 lncRNA upstream 566784 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055881 mRNA downstream 49237 30521650 ~ 30528239 (-) True XLOC_028855
TCONS_00055880 mRNA downstream 137360 30428468 ~ 30440116 (-) True XLOC_028854
TCONS_00055879 mRNA downstream 155151 30409750 ~ 30422325 (-) True XLOC_028853
TCONS_00055877 mRNA downstream 214636 30354053 ~ 30362840 (-) True XLOC_028850
TCONS_00055876 mRNA downstream 228106 30348676 ~ 30349370 (-) True XLOC_028849
TCONS_00055882 mRNA upstream 125887 30707282 ~ 30712588 (-) False XLOC_028858
TCONS_00055883 mRNA upstream 125903 30707298 ~ 30712160 (-) True XLOC_028858
TCONS_00055885 mRNA upstream 302617 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA upstream 302617 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055886 mRNA upstream 305355 30886750 ~ 31064584 (-) False XLOC_028859
TCONS_00055851 other downstream 1721799 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 2035341 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 2145031 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3436173 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3478191 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 373946 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 393521 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 403961 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 410486 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 411791 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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