RNA id: XM_036967971.1


Basic Information

Item Value
RNA id XM_036967971.1
length 1613
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110509731
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17391095 ~ 17394366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccaGTTTGCCCGAAAGCCACACGAAGAAGAAAGGTCAAAGTTGATCTTGTCCATGTGTTGGTCAgcggtagttagctagctacttgtaAAAGGGGTTCATCTTGCATTTTTGTGATTGTACAAATGTCGTAACTGGATAAACTCCCGACTTTGTGCTATAAGCAAGGCGTGTATTTAAGGATTGTTCGTGGATCACTCACATGAGCAATGCAGAAAATTCGAGCCTTGATAGCAAGTCCACGAGTGTCGAGTTTCAAAAGCAACGGTTGGCTTTACAAGTGTGCAGGGATAAGGTGGATAATGAGTGAAGAGTCAGGGAATGTGCAGAACAAGCCACTGAAACGAGTGGAGGAGGGAAGTGGCGAGTTGGGTGAGCACATCAGAAAGAAACTTAAGTCTGATGTAGAACAGACTGGCGATGAGAGgaaacaccccaaaagaaaagtgGTCCTGCTTTTGGCGTATTCAGGCAAAGGTTACTACGGTATGCAGAGAAATGCTGGATCTTCCCAGTTCAAAACCATTGAGGATGAGCTGGTTACAGCACTGATTAAGTCTGGGTGCATCCCAGACAACCATGGAGATGATATGAAAAAAATGTCATTCCAAAGATGTGCAAGAACGGACAAGGGTGTTTCTGCAGCAGGTCAAGTGGTCTCTCTAAAACTATGGATGATTGAAGACATAAAGGAAAAGCTCAACTCCAATCTTCCACCACAGATCCGAGTGCTGGGTCTGAAACGAGTGACTGGGGGCTTCAATTCTAAAAACAGCTGTGATGCCCGCACATACTCCTACATGCTCCCCACTGTGGCCTTCGCCCCAAAAGACTATAGCACTGAGAATTCTATTGCATTCCGCCTGGAGCCAGAGACACTGCAGAGAGTAAATTGTCTGTTTGGCAGCTACAAGGGCACTCATAACTTTCACAACTTCACCTCCCAGAAGGCCGCGCGGGACCCCAGCGCCCGCCGTTACATCACAGAGATGACCTGTGGCGAGCCCTTTGTGCGTGGCGGCGCTGAGTTTGCTGAGATTACCGTGCGTGGCCAGAGCTTCATGATGCATCAAATCCGGAAAATGATTGGCCTGGTGATAGCTGTGGTGAAGGGTTATTCTGGGGATGAGGTGTTCAAGCGAAGCTGGGGTGAGGAGAAGGTGGATGTACCCAAGGCCCCTGGGCTGGGCCTGGTGCTCGAGAAGGTGCACTTTGACAGGTACAACAAGCGCTTCGGCGGGGACGGCCTCCATGAGTGCCTGGAGTGGACTGAAGAGGAGCAGGCTATCTTGGCCTTCAAGGAGGAACACATCTACCCCAGCATTGTGGAGACGGAGTGCCAGGAAGGGTCCATGGCCAGCTGGATGGCCACACTGCCCATACACGACTTTATGGCCACTGCAAAAGGGGCTCAGGATAAGGACAGGGGGCAGGATGATGAGGATGAGGGTAATGGTTCAGATTCTGCACTTTGAAGTCTCCAGCAAGTAGAAAGACACCCTTTGCTGTATCTCTCAAGAATGAGCTTTTGTTTTGCTATGGAAATGCATTGTCAATAATGCCACTGATTTTAAATTCATACGtttgaataaacattttgttcttTAATTTAAA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K06173 truA, PUS1; tRNA pseudouridine38-40 synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2467880 lncRNA upstream 63414 17327504 ~ 17327795 (+) True G2158593
TU2467877 lncRNA upstream 67466 17323509 ~ 17323743 (+) True G2158590
TU2467875 lncRNA upstream 69381 17321523 ~ 17321828 (+) True G2158588
TU2467873 lncRNA upstream 71162 17319847 ~ 17320047 (+) True G2158586
TU2467863 lncRNA upstream 79697 17311264 ~ 17311512 (+) True G2158579
TU2467937 lncRNA downstream 34044 17428410 ~ 17432052 (+) True G2158645
TU2468104 lncRNA downstream 258967 17653333 ~ 17657658 (+) True G2158786
TU2468124 lncRNA downstream 372425 17766791 ~ 17789034 (+) True G2158803
TU2468202 lncRNA downstream 394919 17789285 ~ 17800718 (+) False G2158872
TU2468204 lncRNA downstream 394919 17789285 ~ 17795252 (+) True G2158872
XM_036967935.1 mRNA upstream 352507 16987866 ~ 17038702 (+) False LOC110509722
LOC110509337 mRNA downstream 1484 17395850 ~ 17399424 (+) True LOC110509337
XM_021590803.2 mRNA downstream 5877 17400243 ~ 17406305 (+) False LOC110509732
XM_021590802.2 mRNA downstream 5899 17400265 ~ 17406305 (+) True LOC110509732
XM_021590804.2 mRNA downstream 18195 17412561 ~ 17415939 (+) False LOC110509733
XM_021590805.2 mRNA downstream 18198 17412564 ~ 17415939 (+) True LOC110509733
TU2467776 other upstream 200081 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 200111 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 1037544 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 2297260 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 3455390 13933248 ~ 13935819 (+) True G2154512
TU2470138 other downstream 1666177 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 1666177 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 1666177 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 1671812 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 1742303 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile