RNA id: XM_036967306.1


Basic Information

Item Value
RNA id XM_036967306.1
length 4059
RNA type mRNA
GC content 0.54
exon number 25
gene id LOC110509735
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 17428405 ~ 17477564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTGCGCAAAATTGCGGGACTTAGAGAGCAACTGAAGGCGTGCACTAACCTTGTTGAGACCATAATCGATACGAGGGTTCCTCTGGGGGGGAACTATTAGCCCATTGAAACTATTACGAGATGCCGCTTGCATAAATGTTATGGACTTGCGTTGGAACAAATTAAAACACATTATTGAACGGGTTGCAACGGAGCCAACGATATCCTCTGTATACCAACAAAAACACCCAGGCGTGCCTTCTGTTTTTAAGGTGGATATGTTTTGCTAGCAGCTAGCTTACATTGGGGCATTGTGTCTTTGTAAACACTGCGTCAGTtgtgtaagctagctagctaccaaaacaaaaaaaacatgggaCTCGCATATTGTTAAAAGGAGGCTGACTCCTTTCCATTCTTTACCTAAACATGAGAGAAGAAAGTCGTTCTTTCTTAAGAAGGCAGTTCATGGCAATTGAAAGACGGGGTGAACTTTCCTGCTGCCCCGACTTCACGGAGGAGAAAGGGACTTCCGAGAGAGGAGATATGCGACCGTGCAACGCTTGTAATTTTACTTCAAAATAAAACCCCGAGGTTCTGGAGCGATGGAGACCGTGGGGAAATTCGAGTTCAGCAGGAAGGACTTGATAGGACACGGTGCATTTGCGGTGGTGTTCAAAGGCAGGAATAGAGAGAAACACGACTGGGAGGTGGCTGTGAAATGCATAAATAAGAAAAACTTGGCAAAATCTCAGACCCTTTTGGGAAAAGAGATCAAGATACTCAAGGAACTAAAACATGAGAACATTGTTGCATTACATGACTTTCAGgaaaCGGCCAGTTCTGTGTACCTGGTCATGGAGtactGCAATGGTGGGGACCTGGCGGACTATCTGCACTCCAAGGGCACCCTGAGTGAGGACACCATCCGGGTGTTTCTGCAGCAGATAGCTGGAGCCATGAGGGTGCTGCAAGTCAAGGATATCATCCACCGAGACCTCAAACCCCAGAACATCCTGCTCTCCTACCACACAGGACGCAAGTCCCACTCCACCAACACCTGCATcaagatagCTGACTTTGGGTTTGCCCGCTACCTTCAGAACAACATGATGGCTGCCACTCTGTGTGGGTCCCCTATGTACATGGCACCTGAAGTCATCATGTCTCAGAACTATGATGCCAAGGCTGACCTGTGGAGCATCGGTACCATTTTGTTCCAGTGTCTGACTGGGAAAGCCCCGTTTCAGGCTAGCAGTCCCCAGGACCTCCGGCTGTTTTATGAGAAAAACAAGAACCTCAGCCCCAACATCCCCAGAGAGACCTCCTGTCACCTGAGGAATCTGCTGCTGGGTCTTCTGCAGCGCAACCACAAGGACCGCATGGACTTCGAGGAGTTCTTCTGTCACCCCTTCCTAGAGACGAGCTCGTCCATGAAGAAGACTCCTGCTGTGACCATGACATGCTTTCCCAGCTCTGCTTCAGCAAGCTCCTGTAGCAGCTCTTCCAACTCACATTTAGCCTCCCCaccgCAGTCTCTGGCTGAGGTCCAGCAGCTCCGCGCCAAGACCCTTGCCTCCCCTACCGAGGATGCCCCTGGCCTTCTCCTCAAGGACTCGTCTGGAGGTGGCTGCAGCAGCAAGAACTCCTCTTGTGACACAGACGACTTTGTAATGGTGCCCGTCCACTTTCCCACAGGTGAGCTCACCTGTGACGGGCCTACTGGGAAGGTGTTCCACGACAGTCTGATGAACAGCGGctctCTATTGGCCTCTGGTGGCCTGGGCAGTCAGGGCAAGACCCCACCCCACTCCCCCTCCTACAGTGGCTCCCGCAGTCCCATCAGTCGGCCAAGTGAGTTCTCTGGCAGTAACTGTGGTAACTATGGCAACTACGGTCAGTCGGTGCCCATTCCCGTTCCCACTCAGGTCCCCAACTACCAGCGCATGGAGCAGAACCTTCATTCCCTCAGCCATGATGGCTCCCCACAGCTGTGTACGCTGGTGCGCGGCTGCAGCAGCAATAGTTCACTGGGATTCGGAAGGACTGGCCCATCGCCGCCTTACCCAGGAGGCCACGGGACCTTAGCTGGCCCCTGCAGGCTGTTTGTAGGAGGGGCCAGACCCTTCCAGCTTCCTCATCAAGCTCTCCAATTCCCCGACACACGGCCTCCCCCTCAGCAGCAAGGCCTGGGCACCCGGCTCCACAGCGCCCCCTGTCTCCTGGAGGCCACGAGTGGTGGCGGCAGGCAGAAGATCAGGAAGCAGCACTCTGACCCTGTGGTGGCCAACCTGCAGGCAGGCATGATGGCTATGCGGCCCCTGCACTCCTCCCCCAGGCTGAGTGAACTCATGCAGCGCAGCCCCCTCCCCACCATCCTGGGATCCCCCTCTAGAGCCATACCACCCTTTGAGTTCCCCAAACCTCCCAACTCCCCCAACCTGGTGACTTTCTTGGCCCAGCAGGGTCTGGTTCTGGCCCCGCCCGGCAGCAAGGCTGCCTCAAACCACAGGTACCCAGGACAGCCTCCTACTGTCCAGCTTGGGCAATACAGCCAGAGGACTACAGAAGACAACAAAAGCTTCGGCAGGTCTCAGAGTGCAGGTCGTCTGTCTGACATGCTGCTGATGGCTGCATTTGGAGGACCGCTGGGGGAGCACGGCAGCAGTGAGAACCTCAGCTCAAACAGAGACATCACAGcaCCCTCTGGTGGTGGAGCCATGGCAGCAGGCTCAGCCCTCCCAGCTCAGGTGGTGTTCACTGTGGGCTCCCCACCCAGCGGCAGCATCCCTCCACAGCCCTCCAAAACCAGACAGTTCTCAGGCTCCTCCAGCTCCATAAGCCCAGTGGGTTCTTTTACCAGCCGATTTCAGACAGGCACCTATCTGGACGGCTTTGAGGGTCCTTCCAGACCATGCTACAGCTTCACAGACCCAATTACGGCCAACATGGGGGGACCTGTTAGCTTCCTGGCCCCTGAGCTGCCAGAGGAGACACTGATGGAGCAGGAGCACACAGACACCCTGAGGAGCCTGCGCTTCACCCTGGACTTTGCCCGCTGTCTGATGGAGGTGGCAGGGGTCAGGGGGGCTGGGGCGAAGCACGGGGACACCTCTCCGCCCTCTCTCCTGCAGCAGCAAAGCCTAGTGGCTGACCAGATCAGCTCCCTCAGCCGGGAGTGGAGctatgCGGAGCAGCTGGTGTTGTACATGAAGACTGCAGAACTTCTGTCGTCTGCCTTGCACACAGCCATGGAGCGCGTCAAACAGGGAAAACtgtacccctctgctactgtcaAACAAGTGGTCAAGAGGCTGAACGAGCTGTACAAGTCCAGCGTGTCGTCCTGCCTCTCCCTCAACACGCGGCTGGCACATTTCTTCTCCCGCAAGCACCGTCTCATGGACCACGTCAATACCATCACCGCCGAGAGGCTGCTGTTTAGCCACACTGTTCAGATGGTGCAGGCTGCTGCTCTGGATGAGATGTTCCACCAGGGAGAGGCGTCGGTGCTGCGCTACCACAAGGCCCTGCTGCTGATGGAGGGCCTGTCCTTGCTCCTTACCGAGCAAAACGACATCCTCAGCGTCAGCAAGTGTGAGGCACCTCAGAACTTTCACCTCTGTCCCACCACATCCATTAAGCCTGAACTGCAGTAGCgtatctgttgttgttttttacattttacaaTGTAGTAATTttgcagactcttatccagagcgacttacaggagcagttagggttaagtgccttgctcaagggcacattgccAGATttgttcaccttgtcagctcggggatttgaacctgcgTCCTTTATGTTAATCTGTGTggcctaacactctaaccactaggctacctgcctctaggctacctgcctctaggctacctgcctctaggctacctgcctctaggctacctgcctctaggctacctgtataAAGCATGACTTTATTTCCATGACTACACAGGTAATTGGACACTTTTGGCTGTTCTTTTTTACTTACTGGTAGCTTAGTGAGTTGTCCCTTTCacaacatcaatcaatcaatgaataaTACTACTTCTACTTTCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2468293 lncRNA downstream 12702 17416062 ~ 17418738 (-) True G2158954
TU2468405 lncRNA downstream 18053 17412582 ~ 17413387 (-) True G2159064
TU2468401 lncRNA downstream 25919 17404925 ~ 17405521 (-) True G2159061
TU2468353 lncRNA downstream 121689 17309535 ~ 17309751 (-) True G2159013
TU2468351 lncRNA downstream 123132 17308046 ~ 17308308 (-) True G2159011
TU2469071 lncRNA upstream 613745 18091309 ~ 18091633 (-) True G2159711
TU2469095 lncRNA upstream 634006 18111570 ~ 18111820 (-) True G2159735
TU2469119 lncRNA upstream 652961 18130525 ~ 18130733 (-) True G2159759
TU2469124 lncRNA upstream 655666 18133230 ~ 18133563 (-) True G2159764
TU2469139 lncRNA upstream 665243 18142807 ~ 18143256 (-) True G2159779
XM_021590806.2 mRNA downstream 5927 17419279 ~ 17425513 (-) True LOC110509734
XM_021590795.2 mRNA downstream 47967 17340761 ~ 17383473 (-) True LOC110509730
XM_036967542.1 mRNA downstream 96380 17204035 ~ 17335060 (-) False LOC110509728
XM_036967543.1 mRNA downstream 96380 17204035 ~ 17335060 (-) False LOC110509728
XM_036967544.1 mRNA downstream 143432 17204035 ~ 17288008 (-) False LOC110509728
XM_021590813.2 mRNA upstream 39525 17517089 ~ 17597551 (-) True LOC110509737
XM_036967198.1 mRNA upstream 198868 17676432 ~ 17800749 (-) False LOC110509738
XM_036967199.1 mRNA upstream 198868 17676432 ~ 17800749 (-) True LOC110509738
XM_036968040.1 mRNA upstream 1020368 18497932 ~ 18722649 (-) True LOC110509743
XM_021590829.2 mRNA upstream 1309282 18786846 ~ 18800442 (-) False LOC110509746
TU2467320 other downstream 784843 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 823434 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 1008019 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 1045395 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 3200434 14227820 ~ 14231006 (-) True G2155120
TU2470823 other upstream 1798704 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 2506981 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 2605581 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 2610666 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 2831625 20309189 ~ 20309802 (-) False G2162405

Expression Profile