RNA id: TCONS_00055883


Basic Information

Item Value
RNA id TCONS_00055883
length 654
RNA type mRNA
GC content 0.40
exon number 2
gene id XLOC_028858
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30707282 ~ 30712588 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcgtttattaaagaggagagtgaagatgtgaagattaaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggagagtaaagaggaggaacatcatgtcaaaattgaggaaaaaaataatttacagactgatgatattttgaaaaggagagacaagaatcatttcacctgcactcagtgtggaaagagttttggaagaaaacacaatcttaagattcacatgaggatccacactggagagaaaccatacacatgcaatcagtgtgggaagagtttcaaccaatcatcaaacctttataatcacatgatgatccacactggagagaaaccattcaaatgcactcaatgtgggaaaagttttaaccgCTCATCAGACCTTCATCAacatatgaggattcacactggagagaaaccattcacatgccctcagtgtgggaagagtttttactgctcatcacaccttcatcaacacatgaggatccacactggagagaaaccattcacatgctctcagtgtgggaagagtttcaggcaatcatcaaactttaagcaacacatgaggatccacactgaagagaaaccattcacatgcactcagtgtggaaagagtttcaaccaataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141715

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057365 lncRNA downstream 125903 30577476 ~ 30581395 (-) False XLOC_028857
TCONS_00057366 lncRNA downstream 125903 30579097 ~ 30581395 (-) True XLOC_028857
TCONS_00057364 lncRNA downstream 161012 30540999 ~ 30546286 (-) True XLOC_028856
TCONS_00057363 lncRNA downstream 161882 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00058241 lncRNA upstream 348197 31060357 ~ 31062275 (-) False XLOC_028859
TCONS_00058242 lncRNA upstream 348197 31060357 ~ 31062771 (-) False XLOC_028859
TCONS_00058243 lncRNA upstream 348197 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00055896 lncRNA upstream 383669 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00055897 lncRNA upstream 436019 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055881 mRNA downstream 179059 30521650 ~ 30528239 (-) True XLOC_028855
TCONS_00055880 mRNA downstream 267182 30428468 ~ 30440116 (-) True XLOC_028854
TCONS_00055879 mRNA downstream 284973 30409750 ~ 30422325 (-) True XLOC_028853
TCONS_00055877 mRNA downstream 344458 30354053 ~ 30362840 (-) True XLOC_028850
TCONS_00055876 mRNA downstream 357928 30348676 ~ 30349370 (-) True XLOC_028849
TCONS_00055885 mRNA upstream 171852 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA upstream 171852 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055886 mRNA upstream 174590 30886750 ~ 31064584 (-) False XLOC_028859
TCONS_00055887 mRNA upstream 213383 30925543 ~ 30931296 (-) True XLOC_028860
TCONS_00055895 mRNA upstream 309468 31021628 ~ 31064105 (-) False XLOC_028859
TCONS_00055851 other downstream 1851621 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 2165163 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 2274853 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3565995 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3608013 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055888 other upstream 243181 30955341 ~ 30955504 (-) True XLOC_028861
TCONS_00055889 other upstream 262756 30974916 ~ 30975079 (-) True XLOC_028862
TCONS_00055890 other upstream 273196 30985356 ~ 30985519 (-) True XLOC_028863
TCONS_00055891 other upstream 279721 30991881 ~ 30992044 (-) True XLOC_028864
TCONS_00055892 other upstream 281026 30993186 ~ 30993349 (-) True XLOC_028865

Expression Profile

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