RNA id: TCONS_00055885


Basic Information

Item Value
RNA id TCONS_00055885
length 4397
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_028859
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 30884012 ~ 31064584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctctcgttcacTCGAAATCGCTGGAttacagcaggaggaaccctcatcgactctctcagaaggctgtaatagtctctgaagcgaaaaggatggcatttccttgctttccctgtgctcATATGCGAAATTAATTGGCAATAAGGCACACGTGCTTAGGCACACGTGACAGCTTATGCTgccaattcaattggcatttcattggcccgttatatactctttcagacgattggctttctgaaacaaaatccccattcgtggattaataaataaatccactgatAGCATTAAAGTTCCCCAGCCGAAGGGTAACAGCTCTGCTTGATGCTGTGGTTTATCTGAATGCCTGTAACTGATCAGGCCAAACACGCAGCTCATATGATAAGACAGTTTATGCATTGTGAGCTGTTGAACTTTATACCCAGCAATAAACCTTATGTCCtccttgaaataattcattaaCCAACTTGTATTTCAGAGAAACTGCAGATATTGTCAGCGCCACTTgcgttcctgctgcacaagagcgtctgtacttctgcatctgcagtatggcagaggagcgagtaaaggactctctctcagagaaatacagtgtgagatcaggatcatccagctctgtgtctctgaagagtgactggtcaAAAGATGAACCACCAAAGTTCAGTGAGAAATCACCATCATCTGCTCGAAGtgttgaatatGAATTACCATATTCAGGAGACAAGACTCACAGAAGCCACAAAGGTTTTACAAAGGATCTCCCGAGGATCTTCCAGaatcttgagagcaaaATTATCAGATATCTAAAGAATGAACTGGAAAAGtttaagaaaatcttacaagaagaaaacagacaagactttgtaaagcactttaatgAAAACAGAAGCATAATtacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatgAAGCAGCTGATACTCTCGAGGGTgagctgttcttcattaatcagcttaaatgtggcctgaagaagaaatatcaaaatgtgtttgaaggaattgcacagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaacaggagttgctggcatcgggaaatcagtctctgtacaaaagtttgttctggattgggctgaaggaaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaatgGAGAAAGAAAaccaaagtttaaaagacctcataactcagtttttcccacagactaaaggactgaaccttacaagaagcacacgattcaaagtgctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctcttgatgttctcctgacgaaactcatcaagggaaatctgcttccttctgctctcatatggatcaccagcagaccagcagctgccaataagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccaatGTTCTCCTGAACATTCTCAAGGAGAACAGAAATACTGAACTGAAACACAGGGATAATTCTGAAACACTGCATGAATCTCCCAAGACtttgacacagatgtacacacattttctccgctttcagatccagcatagcagaagaaagtatgatggagaaaacacagcagatgtttCCTGGGATCCAaacctcatcctttcactgggaaaactggccttccagcagctggaaagaaacaatgtgatcttctatgacagtgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatcttttgGGAGGAGACaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgtTTCTAGACAGTGACAAGAAACATCTATCTATTTTTAGacagaaaagtaaaaataaagtcaTGACAGATTTGCTGAAGACTGCAGTagacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtcaaatcgacaactcttacgaggcctgttgacacagcagaatgacagagaccagagcaaagaggaaataattgcgtacatcaagcagaaacttgaaggaaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctgacctttcacctgcccagtggtctgctgtggcctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactgtcagcagtcatcaaaacctccaaaagagctctgctacagggctGTAATCTCAATGTTCGgtgttgtgagagtttgtcttcagctctacaatcctcaaactgtttgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcggctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacacactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagagtgtgagagagaatcagccgtatcctgatcatccacacagatttgatCGTCCTCAGGTGTtatgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgctGGTGTGTggatatcagtgtcatataagagcatcaggaggaagggaggaggtgttgagtgttggtttggatgtaatgctcagtcctggagtttgagctGCTATTCCTCCAGTTCCTCATTCAGTCACAATAACACACTCACTGGTCTCCCAGTGaaggcgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggttctggctttattctggatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcaatgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtctgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgtgtgtgggcgtgtgtgtgagtgtgtgttcactattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtcttcatcagtgtcatcattgatgttgatgaagtgtcctccaggatgctgctgtgttcagatcagctcattcttgtctacaggttgatcttcttcattgtttctctgttgtttgagcacaaataataaaagtcaatgacaaatccactgctgatattagaatgtgatgataaacatggaaatgtctgaatcctgtctgaatctctgtcaaatcttgaatcaactgtagagaaatccagcagctcaatgaataaaggagaaatgaagtgtgacgtttgtttctgctcttcttcttcttcatgatttgacttgaactgaacaataaaaacacatttattccagtatttattgatctgttcatgttagttgatgacagtaaagttgttctctgttagttcttgttgactctcagtgcattaactgatgttcacaAGCACAACTGTGGATTAataatgcttcagtaaatgtCTGATCACTCTCATTCATCAGGAGTCAGTAAC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-332 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000187247

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057365 lncRNA downstream 302617 30577476 ~ 30581395 (-) False XLOC_028857
TCONS_00057366 lncRNA downstream 302617 30579097 ~ 30581395 (-) True XLOC_028857
TCONS_00057364 lncRNA downstream 337726 30540999 ~ 30546286 (-) True XLOC_028856
TCONS_00057363 lncRNA downstream 338596 30540999 ~ 30545416 (-) False XLOC_028856
TCONS_00055896 lncRNA upstream 31245 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00055897 lncRNA upstream 83595 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00057367 lncRNA upstream 176539 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00057368 lncRNA upstream 181157 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00058244 lncRNA upstream 491310 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00055882 mRNA downstream 171424 30707282 ~ 30712588 (-) False XLOC_028858
TCONS_00055883 mRNA downstream 171852 30707298 ~ 30712160 (-) True XLOC_028858
TCONS_00055881 mRNA downstream 355773 30521650 ~ 30528239 (-) True XLOC_028855
TCONS_00055880 mRNA downstream 443896 30428468 ~ 30440116 (-) True XLOC_028854
TCONS_00055879 mRNA downstream 461687 30409750 ~ 30422325 (-) True XLOC_028853
TCONS_00055913 mRNA upstream 183384 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA upstream 237876 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA upstream 238116 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055916 mRNA upstream 470865 31535449 ~ 31698009 (-) False XLOC_028888
TCONS_00055917 mRNA upstream 470865 31535449 ~ 31784872 (-) False XLOC_028888
TCONS_00055851 other downstream 2028335 28829894 ~ 28855677 (-) False XLOC_028829
TCONS_00055850 other downstream 2341877 28542021 ~ 28542135 (-) True XLOC_028825
TCONS_00055849 other downstream 2451567 28432331 ~ 28432445 (-) True XLOC_028824
TCONS_00055832 other downstream 3742709 27141179 ~ 27141303 (-) True XLOC_028817
TCONS_00055829 other downstream 3784727 27088371 ~ 27099285 (-) True XLOC_028815
TCONS_00055898 other upstream 129308 31193892 ~ 31193998 (-) True XLOC_028870
TCONS_00055899 other upstream 130352 31194936 ~ 31195042 (-) True XLOC_028871
TCONS_00055900 other upstream 131409 31195993 ~ 31196099 (-) True XLOC_028872
TCONS_00055901 other upstream 133516 31198100 ~ 31198206 (-) True XLOC_028873
TCONS_00055902 other upstream 134576 31199160 ~ 31199266 (-) True XLOC_028874

Expression Profile

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