RNA id: XM_036967638.1


Basic Information

Item Value
RNA id XM_036967638.1
length 6658
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110509741
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18288738 ~ 18380940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGCAGAAGCGGCCTGTTGTGGGGATAGCCAGGGAACTCTGGATGCATGGCAGCAGCACTGGTAAACTATGGACAGGTATCTGTGTTACAGGGAGGTGAAAGGCTTGAGCACCAGGTCATTGGATTTACACCTAATCCAGGGATGAAGCCGTATTGTGTTTGTAATACTGCCAGGACATCATGCGAGGTCACAGGTCAAGTGACATTGAGGAGCTTCTGAGACAGTCTCACTCAGAGCTGCTGTGGATCCAGAGACAGCTGTCAATCATCGCTGCCAGGAACTCCCATCACCTGCAGGTCCAAGGGAAGCTGAGACATGAGGTTACTCCCCTGCACTCCACAGTTCTTTCATCCCACAACGTCAGCCTCTTCCGCCTTCTGGAGGATAGAAACCGAGCCCTAAAGCTTGAGGTGGCTACCCTTCGCCAGGAGAAACAGCAGTACAGAACACTGAAAACTAAGCTCCAGGATGCGTTGCAGGAGAAAAATCGCCTGAACATTGAGTTGTCCAGCCACAACCTGAAGGTATCCAAGTATGACCAGGTAAGGTCAGAATATGAGCAACTTAGACACACCTATAGCACTGTGAGTCAGGAGAGAGACTTGGCtcaagaggagaggaaacagctCCAAGGCAAACTGGAGAACCTCGAGCAGGTCCTCAAGCATATGCGAGAGGCTGCAGAGAGGAGGCAGCAGTTGGAAGAGGAGCATGAGCAGGCCCTGGCTATTCTCACCACCAAGCAGCAGGAGATTCACCTTCTGCAGAGGGCTCAGGTTAAAGCTGAGAAAGAGCATGAGGGAGCGGTCCACCTGTTAGAGGTCAAGGTTCGCGACCTGGAGCTGAAATGCAGGTCACAGACTGAACAGTTTGGCCAGCTGTCCAAGGACCTGGAGGATTTCCGTCTGGAGGCGGATACTGTAGACATCCTCAGCACTGAGCCTTTCTCCAAACACAACGTTCCCTTTCTCCCAGAAAATAAACTCTCCCAAATCCTCAACGGACTGGCAGCCCAGGCAGGAAAAGGCGATGAGAGCTCGGCAAACACTCGGCTGATATCCAAGTTCCTCCGCCCACTGCAGatcggagacagagacaggccgGAGCTGCTGTCTGTCAAACCCTCCGCCGTGACAACGAGCTGCCCCAGCAGCCCGCGACAGGCGACTCCCTCAGAGATGGAGGATGAGATCCGTCGTGCACCCAGGTCCAAGCCTCGCTACACTGGCACAGTCCGTCTATGCACTGCCCGCTACAGTTACAACCCTTATGATGGGCCTAATGAGCACCCAGAGGCAgagctccccctggtggctgggAAGTACCTGTATGTGTACGGCACGATGGATGACGACGGCTTCTACGAAGGGGAGCTGCTGGATGGCCAGCGAGGACTGGTCCCCTCCAACTTTGTGGAGTTTGTCCAAGACAAGGAGAAACCATCCATCCAGCCAGGGGACACAGGGGAGGACCTGGGCTCTCTGGACAATACCTCCCTGGGCCTAATGGGGGCCGATGGAGGGCCCCCTCAGGATGGGCTACTGGGCTCCACCAACCCACTGGGCCCCTGCAGCAACGGCACAGGGACCCTGGACCCTGAGGATCTGTCTGATGACATTGTGCCTTACCCCCGGAGGATCACTCTAATCAAGCAGTTGGCCCGTAGCGTCATTGTGGCCTGGGAGCCCCCCATGGTGACTCTGGGCTGGGGTAACGTCAGCTGCTACAACGTGATGGTGGATGGTGAGGTGCGTGCCAGCGTGCCCTACGGGGGCAGGACCAAGTCTTTGTTGGAGAAGCTGGATCTGGACACGTATACGCACCGCGTGTCCGTGCAGAGTGTGACAGACAGGGGACTGTCGGACGAGTTACGCTGCACCCTGATGGTGGGAGCCAACGTGGTGGTCGCTCCATATGGCCTGCGTGTGGACGACATCCTGCGCGACTCGGCCGAGCTCTCCTGGTTGCCCAGCAACAGTAACTATGGGCACACGGTGTTCCTGGATGGGGCGGAGCATGCGGTGGTGCGGCCGGGGAGGTACAGGCTGCGCTTCGTCAACCTCAAGGCCATGACGGTGTACAAGGTGAGGGTGGTGGCCCGGCCACACCAGGTGCCATGGCAACTGCTcatggagcagagggagaagaaggagaCTGCTGTGGAGTTCTGCACACAAGCTGCTGGCCCCCCATTACCCCCTCAGGAGGTGCAGGTGCAGTGTGGCCAGGCCCCAGGGGTCCTGCAGGTGCGCTGGAAGCCCCCTGTCCTCTCACCCACCGGAACCTCCAATGGAGCCAGCGTCATCGGATATGCAGTCTGCACTAAAGGACagaggATAGCGGAGGTGTTGTACCCCCTGGCTGACTATGTAACAGTGGAGCTGAACAGGATCCAGTGTCTGGAGGCCAGGGAGGTCATCGTCAGGACATTGTCAGCACAGGGAGAGTCCCAGGACTCCCAAGTCGCCCCCATTCCAAACAACCTACTGGTGCCTCTTCCTCACAATGCCCCCCTGTCCCCTCCGCACCTACACGCAGGGCCCCCTCCACCTCACCCCCATGCCCCCTCACCCCACCTCCAGTCACCTCacctcccccacccccccatgCCTCACCCCCAGCCTCTCTCACCCCTGCCTCACAGACAACCCCTCCCTAACCACCCTCCTCACCCTCAACCCCAGACACACCTCCAACCCCTGCAACCTCATCCTGTCTCCCAGCCCCAGACTCACCAACAGCCTCACCCCCCTCACCCTGGTGGTCCTCCACAGCCACTGCACCTCCAGCCTCACCCACCTCACCCAATGCCCCAGCACCGCCTACCCCTGCTGCCTCATCCCCCCCCTCAGCTCCACCAGAGACCAGTTAGTGCCAGAGACCTGAAACCGAAAGAGCAGGTGGCTCACCATGGGGGAATCCCCAGCCAGCCCTGGGACCCTACCTGCTCCCCCTCCGGCCAGCCTCCTCCTACCCCCATGCATGGACACACCCTGGAGGCGCCCCCCTCTGCTAACCTGCGCTCGCCCTCCCCCCAGAGGATCCTGCCCCAGCCCAGGGGCACCCCCATCCCAGACCAAATGGCCAAAGCCATCGCCCGCAAGGCAGCACAGAGGGTGGCTGCAGAGAGTGGCAGAATGGAGAGGAGAGTCATCTACAATGAGCAGTGTCAGGCCTTCCACCAACAGAActcagacgaggaggaggaggatgaggaagggtATGGTCGAAGCCGCAGGAGACAGGGGGCCTCAGTGGATGAGTTTCTCAGAGGGTCCGAGCTGGGCAGGCCGacccaCTACAGCCACAGTGAGGAGTACCACAGTGACAGCAGCCGAGGCTCTGACCTTTCTGACATcatggaggaggatgaggaggagctcTACTCTGAGATGCAGCTGGAGGAGGGACGACGACGCAACTCCCACAATGCACTCAAGATTGGGAACACCCTCTCTGGGGGTCAGCTGGATCGGGAGACGGGGAGAAGAATGCCCCGAGACGGTCCACAGCCCCAGAGACGCCCTCTCATGGTGCCCTCCATTGAGATAACCACAGAGAGTAACAGTGATGGGAACCTCTCATCCGTCACGGAGGATGTTTACTATGGCAGTGTAGCACGGCACAGGACATGGTCGTCCCGCCGACACCCCACGGGCTCCAAGCCTTCCTATAATGAGGGATACAGGGACCGGGAACGCCGCTCCCCTCCTAACTACGATGAGTCGGAACCAGAGGAATCGTTCCGGATCTTTGTGGCTCTGTTTGACTACGACCCCCTGTCCATGTCTCCCAACCCGGACGCAGCAGATGAGGAACTGCCCTTCAAAGAGGGCCAGATCATTAGGGTATATGGTGATAAGGACACAGATGGTTTCTACCGAGGGGAGATCAGGGGAGGCAGGATGGGGCTCCTGCCCTGCAACATGGTGTCAGAGATCAGGGCTGAGGACGAGGAGACCATGGACCAGCTCATCAAGCAGGGCTTCCTCCCACTCAACACACCAGTGGATAAAGTAGGAATAGGGCAGGACAGACGTGGCTTCCGCCAGCACCAGGCCACCAGGAGGATGGTGGCCCTCTACgactatgaccccagagagagcTCCCCCAATGTGGACGTGGAGGCTGAGCTGACCTTCTGTGCTGGTGACATCATCTCTGTATTTGGAGAGATTGATGAAGACGGGTTCTACTATggtGAAATCAATGGCCACCGCGGCCTCGTTCCCTCTAATTTTCTAGAAGAAGTGCCTGACGACGTGGAGGTGTACCTGACGGACACTCCGTCTCGCTATGCCCAGGACGAGCCCGCCAACCGGGCCGAGGCCAAAAGGGTAGCCATGGATACCACAGAGAGTACGGCCCCGCCTGTCCGAGCAGCGTCCCCCACAGTGCGTCCCCTGTGTCCTCCAGGCACCATGCGGCCCATCAGCCCCGCCAGGGGCCCCAGGGACCCCCGGGACAACAAAAAGAAAAAGGGACTGCTTTCCAAGGGGAAGAAACTGCTCAAGAGACTCTCTCCGGTTAAATAAACTGTCCCCAGCTGACCCCAGAAAAGATGCTGGGCCCAGTATTGTAAAttgcatacagtacacacaatcaAATCAGCCGAATCTACAGCACACAACTACAATGGCTACGTGTTCGTATGTATTACAGGACAATATATGTGAGCCTAATCTAATATAGTCAGTGATACAACATTCATGTTCTAGTGTTGAATACACATATTTACGTACATATACTCAGTGCCAAATTCAATGAGAACTTTGCTCACATACTGTATAACTGTGATATATTTGAGGTGGAGGAAAAAAATAGGAGTATAAACTAGGACTTTCATTACATTTTACCGCTGTTTTCTTTAATCAAATGGTTATTAAGGGACTTTGGAAATCAGGACAATGCTGATAATGCATTTGTGTGCATTTGTTGTAGGGTAACAACAGAGTAGCCTATTCTTTTTTGTTACAACCCGAGCTGGTTTCCATGGCAATTGTGTCAATATAAGGTCTCTAAAATACATGGCGTGGCAAAAACAAGTTGTTGTGATAGTCAGATGTCAATACTAGGAGACAGACCATACTCCTGGAACACTAGAGCAACAACTCAACGACACTGTTATTGATGGCATTCTGTCAGTAATGCTGGCTGCTAACACAGAGGCTTTATTCAGTGCAATATATCACGGACAGGAGGGTGACAAATGGTTGAATCACTCACAGAACCTAGGAGTCTGCAGGGTGGTTGGCCACAGAGCATTACAGCAAGGAGAGGAAGCTACATTGGGTAAGACGTTTGAACCATCTCAGTGGCCTTTATGAAAACAATATAGAGCATGACATTCCTCGTTTTCTATGGTTGAACAAGGTTGTTTTTAAACTAACACTAGTCTGCCAAGAACCCCTGCTGCATCTCTGCAGCTTTGTTTGATGATGCCTTCCAATTGCACAAAGGGGTATGTTTTGTCTGATGAATGGAAAAgtactgttgtgtgtgtgggtgtaggtGTAGGCTGTGTGTTTGCTCAGTGTGCATTCATGTCTGTGcgttctttctttttttcccaAAAAAGAGGACACGTGGTTAGGAGTCATGTGATCTTAGTGGTGTGCCGCTAACTACATTGCCGGTGTAATGTTCAGTAATGTTCAGTTCTGAGGGTTGTGTTACCCACTCAGCCATTTCAGTAAAGATGTCTAGGTGTGTGCCCTCAAGATTCTGCACCGTTTACTTGTTTACACTATTATAGACCTATTGgcaagagaaagggagggatgaCCTACATACTGTACCTACAACCTCTAAACCAGTAGTTGTGGCTTATGGGCTAaatgagggctaaataaaggatGCATCCAGCTGATTGTCATTTACTAGGGAGGCTGTTAGACAAACATTGTCCTGTATTTTTGACAGCTTTTAAAGCCCTATATTAACCCATTTTCATAACCCATGATCCCATTCTGTAAGAGTTTAGCATCACTACAGTTGCTGTACAGCCAGCATTTGATGTGCATGATCATCAGGGACAATATGTCAATCCATGAGTCACAATGAAATATGTTGAAATGCGATTGATAGTGAAAACTAGTCGGAGAGAGACCTATCAGACATGCCCATCAGCTAAGATATTTAAGGCAAGTGTAATATCCCGCTGTATAAGGATTACAGGGATCTTCTATGTTTATTAAAAAATAGAAAATCTAACGATGGATTGACAAAAAGGAATGTATGAGGTGTTGAGCAGGCAAAATAGTTTATATTTTATTATGTGTCCAAAGTTATGCATTATGTTATGCATCCATTTGTTAAAAGGTGTTCAAGTCATAATACCCAATCATTCATTTGTGAATGCGTGTATGTCTATGTTGTTGCATTTCTGTACTTTTTCCATTTGTCGATCATTTCTAAATGTTTATACTTGATTTTCAGACTGCCTTTTGAGTGCTTTGAGATGTATTCTTACTGTAAACAGTGCAAGCATTCTCCATGGTGTCCTCGAGATAAGATGTTTAAGTCTGTGGTTATGTGCTTGCTCTGTGAATCaaagagaaaaagaaaaagaTCATTTATGGTGATCAAATATTATGTGCATGtgcaaaaaaaaatttttttttttaatcaaaaataAATTTGATATTTTGTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2469189 lncRNA upstream 107393 18181016 ~ 18181347 (+) True G2159829
TU2469168 lncRNA upstream 124116 18164412 ~ 18164624 (+) True G2159808
TU2469155 lncRNA upstream 132482 18156051 ~ 18156258 (+) True G2159795
TU2469154 lncRNA upstream 133269 18155256 ~ 18155471 (+) True G2159794
TU2469151 lncRNA upstream 134928 18153431 ~ 18153812 (+) True G2159791
TU2469240 lncRNA downstream 6051 18386991 ~ 18389764 (+) True G2159873
TU2469515 lncRNA downstream 65374 18446314 ~ 18446621 (+) True G2160139
TU2469523 lncRNA downstream 77186 18458126 ~ 18458362 (+) True G2160145
TU2469694 lncRNA downstream 313958 18694898 ~ 18695157 (+) True G2160306
TU2469709 lncRNA downstream 334763 18715703 ~ 18715936 (+) True G2160321
XM_021590815.2 mRNA upstream 5904 18276048 ~ 18282836 (+) True LOC110509739
XM_036968113.1 mRNA upstream 7762 18275943 ~ 18280978 (+) False LOC110509739
NM_001160601.2 mRNA upstream 869511 17416053 ~ 17419229 (+) True arpc3
XM_021590804.2 mRNA upstream 872801 17412561 ~ 17415939 (+) False LOC110509733
XM_021590817.2 mRNA downstream 11999 18392939 ~ 18442193 (+) True si:dkey-1d7.3
XM_036967296.1 mRNA downstream 385539 18766479 ~ 18783952 (+) True LOC110509745
XM_021590830.2 mRNA downstream 427872 18808812 ~ 18823742 (+) True LOC110509747
XM_021590833.2 mRNA downstream 472330 18853270 ~ 18856153 (+) True LOC110509749
XM_036967316.1 mRNA downstream 581149 18962089 ~ 19065920 (+) False LOC110509751
TU2467776 other upstream 1097612 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 1097642 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 1935075 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 3194791 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 4352921 13933248 ~ 13935819 (+) True G2154512
TU2470138 other downstream 679603 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 679603 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 679603 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 685238 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 755729 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile