RNA id: XM_036967296.1


Basic Information

Item Value
RNA id XM_036967296.1
length 3247
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110509745
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18766479 ~ 18783952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGTACTATCCACATGGGTGCGCTGTGTTCACAAGAAAGCTGCGGTCGCGTGCCATATCCTTTTAGGGAAATGACATCATTTTCGCTTCACGCTGCTGTGTCTAATGGAAACGCGCTAGATTGGAACTTGAAAGTCTGAACATTTGTAGTCGTGGGAGGTGTCAAGTGGATTTTGAAACGTGACCCGTCTCGAATAGAATCTTATATGGCTGCCCCAGCCTTGCAACAGCCCAGTTTTCTTCTGGCCAATCTGAAAGTTGACTCGACCACCAAACCTTTTCTCCAGCGGTGCCAGGAGCTGGTGAAGGTCATTGATGACTACCCTGCAAAGGAGCTGCACCTGATCTTCCCCTGGCTTGTAGAGAGTGTTTTTGGCAGTTTGGATGGGGTCATCATGGGCTGGAACCTGCAATTCCTGCAGGCACGCAGCAATGAGTACAACATCGTCATGGACTTTCTCGATCCTAGTGGGCCAATGATGAAGCTTGTGTACAAGCTTCAAGCAGAGGAGTACAAGTATGAAATACCTGTCAGCTTTCTCCCTGGTCCTGTAAAGGCATCTATACAGGAAGGTGTCCTCCCAGATTGTCCACTTTTTCACAACAAGCTGCAGTTTCCTCTGTCTGGTCTCCAGACACTCAGCCTGGCGCTCAATCCATTTGAATATTACATGTTCATATTTGCTTCCAGTCTTATCACACCAAAGAACTACCCTCTGGGCCAGCATGTGAGCAGCTTGGACAATGCGTACTTTGTGCTTGTGGACACCTACCTCAAGTACTTCCTCCCTACAGAGGGCAGTGTTCCTCCCTCTCCATTCGCCGACAATAGAGGCTCTGTGTCTCCACCTGCTCCCAGGGCTCCCAGCGTGCCTTTTGCAGGGTATGGCATCCACAGCACCAGCCTCCTCAAGCGCCACATATCCCATCAACCCTCGGTCACTGCTGACCCTGCAGCCCAGGAGATCTGGAGGTCAGAGGCATTACTACAGGTTTTTGTGGAGATCTGGCTGCATCACTACTCCCTGGAGATGTACCAGAAGCTGCAGTCCCCCCAGGTGAAGCTGGCGCTGCTGCACTATCGCCTCAGTATGTCCAGCATGCCGTGCCAACCCCTGACCCCTCCTGGCTCTGGGACCCTCGACACGTACCAAGTACTTTTACCTTTTCATCCACTCCCACCGGGCCTgctggagGAGACTTTCACCCCGACAGAGGAGCACGTTCTGGTGGTGCGTCTCCTGGTGAAGCACCTCCATGCCTTTTCCTGCAGCCTGAAGCCTGAGCAGGTCTGCTCCTCGCCCTCGGCCCACTCCCACGCCAGCCCCCTGGAAGAGTTCAAGAGGGTGGTGGTGCAGCGTTTTGTCCAGCAGAAGCTCTATGTGTTCCTCCAGCACTGCTTTGGTCACTGGCCTTTAGATGCCTCCTTCAGAGCGGTGTTGGAGACGTGGCTTAGCTACATCCAGCCGTGGAGGTACACAGGAGAGAATACCAATCCTCAGACAGACCAGAACAAAGGTGTACCTGAGAAATGGGGCTTGTTTGTTCAGGAGAACCTGCTCATGTACACAAAGCTCTTTCAGGGCTTTCTCAACAGGGTGGTACGCATAGACCTGGTCAACGTCAAAAATGCACTAATGGTCTTCAGGGTGGCCAAAGTCTTCGCTCAGCCAAACCTATCAGAGATGATTCAGAAAGGAGAGCAGCTGTTTCTGGAGCCGGAGCACGTCCTCCACCATCGGCAGCACCGGGTGTTCCTCACGCCAAGCCACGGTGGAAGCTTCCTGTCTGCCCGGCAGTCCGTGGTGACAGACGGGGTTTTCAGGGTGAAGAGCCACGTGTACGGCCTGGAGGGCCAGGACTGCCAGTACAAACAGATGTTCGGCACAGAGCTGAGGGGCGCGGTCCTGAAGCTCATTCAGATCATCGCCCAGGCGAGGCAGACAGCTAAGAGGATATCAGATCACTCAGCTGAAGTGGCGGCCAATAACTCCTTCATGTCTTGGTTTGGAATGGGCTCCCCCGACCTCAACTACACCTTCAatggaggagaggtggatgacACTGGGGAATGTGTCAAGAAGACCCACGAGTTCCTGGAGAGGTCACTGGACTACCTCTGTCTGATATTTCGTCTGAATGCAGGGCAGCTTTCTCAGCTGATGGCAACCCTGGGCTCTGGTCAGGACGATGGGAACTCCAGGCAGCTACCAGACTGTGTTCAGGGTGAGAATGGACTCATCCTCACAGACCTGGGCCGAATGCAGATCATCAATGGACTGCGTAGATTTGAGATTGAGTACCAAGGAGACCCAGAGCTTCAGCCCATCAGGAGCTATGAGAATGCCGTCCTGGTCAGACTGTTTTTCAAGATCTCGTCCCTGGTGAATGAGAGGTTCGGAGGTCACATGGAAGTTCTGTGCTCGCGGCCGGACTTCCTGGGCCGGTTGGGACGACACTACCTGGCCAGCCCCGAGGTCATGGCGGACGGCAGGCAGAGGAGCCCAGAGACACGGCGAACAGCGGAGAGGAACCGACGGCCGCGGCTAAGTCTGCGCACACTGGCGAGCTACAGAACCCTGCTGATGCTTCTATTTCTCTACCTGTTTGGGGTGCTGTTCTCATTCGGGCCCATATCCAGCACACTGCTCATCCTTACAGGCGGCTTTCTCTATGGACTCTTCAACCCTGTTTGGAGATAAACTCAAGTCCCAGTAGCAGGGGAAtgaaaagtttttttttgccACCTGCCTTTGCTTGGCCATCTTATGATATATTCAGTCCCTTTTTATTCTTGTAAATAAATACAAGTGCATTGCTTTTCAGATGAAGTTTGCAAAATCTTTTTTTTAAGCAGTTTTACTGATTGACAGTTGTATGATTTAATATTCTAACAAAATATTGAATGTTTTTCAATTGAACATTGAAAGGATGGTGGTGATTATCCTCAAACTACAAGATTGACCAGTGTAATAAATAGTTACATGAGTCTTGCACTAGTATTTTGAATTGATGCTAATCATTTAACTGAAGATGGTATTCTTTGCCTTTATCGTTTTTGTATGATTGCTTGTCTGTATGTGTGAGCTTGCAAAGACGACAAATGTAGTTGTACAATGTTGCATTCGAATGGCAGAATTATTTCCCGTCACCGATTGAGACAGTCTGGTTGTCATGGCAAAGTTAGCAGGCGTGCTTGTCCACTAAAGACAGGTGAGAGGAAAAATAAATCGTAAATGCACTTGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050290 sphingomyelin phosphodiesterase D activity molecular_function

KEGG:

id description
K12353 SMPD4; sphingomyelin phosphodiesterase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2469720 lncRNA upstream 39422 18726857 ~ 18727057 (+) True G2160332
TU2469709 lncRNA upstream 50543 18715703 ~ 18715936 (+) True G2160321
TU2469694 lncRNA upstream 71322 18694898 ~ 18695157 (+) True G2160306
TU2469523 lncRNA upstream 308117 18458126 ~ 18458362 (+) True G2160145
TU2469515 lncRNA upstream 319858 18446314 ~ 18446621 (+) True G2160139
TU2470032 lncRNA downstream 13032 18796984 ~ 18797824 (+) True G2160626
TU2470012 lncRNA downstream 21785 18805737 ~ 18846905 (+) False G2160614
TU2470013 lncRNA downstream 21785 18805737 ~ 18846905 (+) True G2160614
TU2470216 lncRNA downstream 305140 19089092 ~ 19089358 (+) True G2160789
TU2470223 lncRNA downstream 313357 19097309 ~ 19097687 (+) True G2160796
XM_021590817.2 mRNA upstream 324286 18392939 ~ 18442193 (+) True si:dkey-1d7.3
XM_036967636.1 mRNA upstream 385539 18288738 ~ 18380940 (+) False LOC110509741
XM_021590830.2 mRNA downstream 24860 18808812 ~ 18823742 (+) True LOC110509747
XM_021590833.2 mRNA downstream 69318 18853270 ~ 18856153 (+) True LOC110509749
XM_036967316.1 mRNA downstream 178137 18962089 ~ 19065920 (+) False LOC110509751
XR_005040348.1 mRNA downstream 178137 18962089 ~ 19065920 (+) False LOC110509751
XR_005040349.1 mRNA downstream 178137 18962089 ~ 19065920 (+) False LOC110509751
TU2467776 other upstream 1575351 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 1575381 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 2412814 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 3672530 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 4830660 13933248 ~ 13935819 (+) True G2154512
TU2470138 other downstream 276591 19060543 ~ 19065772 (+) False LOC110509751
TU2470142 other downstream 276591 19060543 ~ 19063907 (+) False LOC110509751
TU2470143 other downstream 276591 19060543 ~ 19065772 (+) True LOC110509751
TU2470148 other downstream 282226 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 352717 19136669 ~ 19137568 (+) True LOC110509753

Expression Profile