RNA id: XM_021590825.2


Basic Information

Item Value
RNA id XM_021590825.2
length 2744
RNA type mRNA
GC content 0.55
exon number 18
gene id LOC110509746
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18786846 ~ 18804561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTAGCAGCTCTTGAATGGATGGAGAATTTAAACCGGAAGTGCGTTTATGTTTTCTATTTTTGCTTTTTGGTGCTGCATTCATTCAAAGCCTACGTTTGCGGCTTGTCTGAAAACGATGTCTGCAATGGAGGTCCCAGGACCAGAAAGCGATTGGAGAAGCCCTGCATTCCGACAGAAAGTTGTTGCACAAATTGAAGAGGCGATGAGAAAGGCTGGGACTGCACACACGAAGTCCAGCAATGATATGGAGAATCATGTTTATGTCAAAGCCAAATCTAGAGAAGAATACTTGTCCCTGGTAGCAAGGTTGATCATTCACTTCAGAGACATTCATAAAAAGGCACAAGGAGGAGGTCTGGATCCCATGAATGCCCTGACAAATCTCACAGGGGTTCCAGGGGGCATCGCCATGGGGCCTAGGCCACCTGGTGCACCCATGGGTGGCATGGGGACCATGGGGCAGATGCAAATGGGTCAGCATGCAATGGCAGGTGTGGCTGGAAATCCTCAAGCGAGAGGTCCAGGGCAGATGCAGATGCAGCAGATTGCCCAGCAGCAGTCCATTCAGTTCCAGCAGTTCCAGGCACAGCAGCAACAGACAGCCATGCAACAACAGCAACAGACGGCCATGCAGCAGCAGCAGACAGCTATGCAACAACAGACAGCCATACAGCAGCAGCAGTTTCAGGTCCAGCAGCAGCTGAAGCTGCAACAGTTACAGCAGCAACACCATCAGAACCAACAGCTCCAACAGCAGCACCaaaaccagcagcagcagcaggcccaaAACCAGCAACAACAGAACCAGATGCACCCATCAAGGCTCCAGcaacaacagcagatagttcagTTACAACTCCAACAGCAGCATGCCCAGGCCCAGGCACAAGCTCAAGCCCAGGCCCAAGCCCAGGCCCAAGCACAAGCCCAGGCGCAGTCCATTCAGCACATggtccagcagcagcagcaggttcaggcccagtctcagccccaggcGGCCCAGCTACCCCCCCACTCCCAGCAGCAGCAGGGCATGGTGCCCCAGTCTCTCGCTGGACAGATGACCTCCACACAGCACGTGCCCATCAGCTCGCTCagtcagcagcagcaacagctcAAGATCCAAGCATTGCAGGCTAGAGCGATACAGCAGCAGCAAGTCCAGCAGGCCCAGCAGGCAGCGCAGCAAGCCCAACAGGCGGCAGCCCAGGCCCAGCTAGCTGCAGCAGTACCTGGACAGATGATGATGCCCCGCCTTGGGATGCAAATTCCACCCCGGTTGCCCCGCGCTGCCCCGAACCCCGCCATACCTCCAAACTCTGCTGCCATGGGAGGACAGCAAATGCCACAGGTTCAGCAGCACCAGATGATGTCATCGCCCTCGCCGGTACAGGTGCAGACCCCCCAGTCcatgcccccccctccccagccACAGCCATCCCCACAGCCCCCGTCCTCCCAGCCCAACTCAGTCAGCAGTTCTGGTCCCACACCGTCGCCAGGTGGCTTCCAGCCTAGCCCATCCCCCCAGCCCTCGCATAGCCCAGCCACCGCACGCACCCCCCAGAACTATAGCGTCCCCTCCCCAGGACCCCTCAACACCCCAGGGAACCCCAGTTCAGTGATGAGTCCATCCGGGGCCAATCAGCAGGAGGACCAGCAGTACATGGAGAAACTCAAACAGCTCTCCAAATACATCGAGCCGCTGCGCAGGATGATCAACAAGATAGACAAAAATGAAGATAGGAAAAAGGACCTGAGTAAGATGAAGAGCCTGCTGAACATtctcactgaccccaacacaaGGTGTCCTCTCAGAACCTTACAGAAGTGTGAGATAGCACTGGAGAAACTGAAGAATGATATGGCTGTGCCGACGCCACCCCCTCCACCTGTGCCCTGCACCAAGCAGCAGTACCTGTGCCAGCCCCTCTTGGATGCCGTCATGGCAAACATCCGCTCGCCTGTCTTCAACCATTCCCTGTACCGTACCTTCGCCCCAGCCATGACAGCCATCCACGGGCCGCCCATCATGGGCCCCATCATCGCGGCCCGGAAGAGGAAACACGAGGAGGATGACCGTCAGACCATCCCCAACATCCTGCAGGGGGAGGTGGCCCGTCTTAATGCCAAGTTCCTGGTCAACCTGGACCCTTCGTTCTGCAGTAACAACGGCACTGTGCACCTCATCTGTAAACTAGATGATAAGAACCTGCCAAGTGTGCCTCCTCTCCAGCTCAGCATCCCAGCAGACTACCCAGACCAGAGCCCTCAGTGGGCAGACGACGGGCAAGTGTATGGTGCTAACCCCTTCCTACAAAACGTTCACAGAAATATGACCTCCAAGCTCCTACAGCTCCCAGACAAGCACTCAGTGACTGCACTTCTCAATACTTGGGCCCAGAGTGTCAGACAAGCCTGTCTTTCAGCAGCATAGACAAGAAGCTCACCTCACCTGTCCAGCATAACTTATCACTAAGACGGTGCAAACTGGAAGGAGTGGGCTACCACATCTTGGAGCACCAGCTCTCCCCTATCACTAGGGTGTGCTGCTGAGGGTTCTATACAAACTGTATTATGAGAAGGTCCATTTGGGATGAGTTATGTAAAGAATTTTGAGTTGAGAAAATGTATAACCAATAACTGAACACGTTGCGGTGTAAAgctttgaagtgtgtgtgtgtgtgtatatactcatAAGGGATTTTTGTTTTGTTCTCATGAATAAAAACTTTTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2469987 lncRNA downstream 51624 18734828 ~ 18735222 (-) True G2160590
TU2469985 lncRNA downstream 52587 18733898 ~ 18734259 (-) True G2160588
TU2469960 lncRNA downstream 81265 18705286 ~ 18705581 (-) True G2160563
TU2469958 lncRNA downstream 82464 18704110 ~ 18704382 (-) True G2160561
TU2469954 lncRNA downstream 91107 18695324 ~ 18695739 (-) True G2160557
TU2470529 lncRNA upstream 54552 18854996 ~ 18856145 (-) False G2161075
TU2470530 lncRNA upstream 54552 18854996 ~ 18856145 (-) True G2161075
TU2470579 lncRNA upstream 128595 18929039 ~ 19010955 (-) True G2161122
TU2470675 lncRNA upstream 261901 19062345 ~ 19065914 (-) True G2161212
TU2470688 lncRNA upstream 288699 19089143 ~ 19089464 (-) True G2161225
XM_036968040.1 mRNA downstream 64197 18497932 ~ 18722649 (-) True LOC110509743
XM_036967198.1 mRNA downstream 986097 17676432 ~ 17800749 (-) False LOC110509738
XM_036967199.1 mRNA downstream 986097 17676432 ~ 17800749 (-) True LOC110509738
XM_021590813.2 mRNA downstream 1189295 17517089 ~ 17597551 (-) True LOC110509737
XM_036967304.1 mRNA downstream 1309282 17431441 ~ 17477564 (-) True LOC110509735
XM_036967241.1 mRNA upstream 33969 18834413 ~ 18842206 (-) True LOC118945262
XM_021590831.2 mRNA upstream 41926 18842370 ~ 18848232 (-) True LOC110509748
XM_021590834.2 mRNA upstream 61506 18861950 ~ 18867753 (-) True nefma
XM_021590836.2 mRNA upstream 267972 19068416 ~ 19070349 (-) True LOC110509752
XM_021590838.2 mRNA upstream 351576 19152020 ~ 19153708 (-) True LOC110509754
TU2467320 other downstream 2140249 16643681 ~ 16646597 (-) True G2158111
TU2467297 other downstream 2178840 16607625 ~ 16608006 (-) True G2158088
TU2466925 other downstream 2363425 16421677 ~ 16423421 (-) True G2157743
TU2466897 other downstream 2400801 16381190 ~ 16386045 (-) True G2157715
TU2464104 other downstream 4555840 14227820 ~ 14231006 (-) True G2155120
TU2470823 other upstream 475824 19276268 ~ 19277006 (-) True LOC110509757
TU2471632 other upstream 1184101 19984545 ~ 19984779 (-) True G2162005
TU2471779 other upstream 1282701 20083145 ~ 20083618 (-) True G2162127
TU2471773 other upstream 1287786 20088230 ~ 20093660 (-) True LOC110509788
TU2472094 other upstream 1508745 20309189 ~ 20309802 (-) False G2162405

Expression Profile