RNA id: XR_005040349.1


Basic Information

Item Value
RNA id XR_005040349.1
length 9861
RNA type mRNA
GC content 0.52
exon number 42
gene id LOC110509751
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 18962089 ~ 19065920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGATgagtagcaacagcagcagcagcaatagcaCTAGCAGCATCTCCTTTGTGGCTTTCTGGGGGGCTCGGTCACTAGAGCACCGCGCTCCcgctcacagacacacaggcgCTCCCAGCGCCACCGTCACACACACGTAGTGGCAGTGGCAGTCGTCGTCAGAGCCGGGGCAGGGACAGGGACTGCTACCTTGACGACTGGAGCTACGGCGACAGCAGCTGCGGCACCATGGCGCAAGCCGCCAAGCAGCTCCGTAAGAACAAGGACCTAGCGGAGCTCGCCGCTCAGGAGCTgaaggataaggaggaggagaagaacaaGAAGAGGAATCGATCGAGGGACCGCAGACGCAAGGCGGATGCTGTCACCAGTTTCCTCCGTGCAGCCCGTTCAGGGAACCTTGACAAGGCTCTTGACCACATCAAGAATGGAATAGACATCAACACATCAAATCAGAATGGGCTCAACGGTTTGCATCTGGCCTCGAAAGAAGGCCACGTCAAGATGGTCCTGGGGCTACTACACGCAGGCATTGTCTTGGAGACCACCACTAAGAAAGGGAACACTGCCCTCCATATCGCTGCGTTGGCAGGCCAGGAGAAAGTGGTGGCTGAGCTCGTCAACTATGGAGCCAACGTCAATTCCCAGTCCCAGAAAGGCTTCAGCCCCCTCTACATGGCTGCACAAGAGAACCACTTAGAGGTCGTTAAGTTCCTGTTAGAGAATGGAGCCAATCAGAGCCTTCCAACAGAGGATGGGTTCACGCCGCTGGCGGTGGCTCTCCAGCAGGGTCATGAGAACGTGGTGGCCCTGCTCATCAACTACGGCACCAAGGGCAAGGTCCGTCTTCCCGCTTTGCACATTGCTGCACGCAACGACGACACACGCACTGCCGCAGTACTGTTGCAGAATGACCCTAACCCCGACGTCCTCAgcaagACTGGCTTCACTCCTCTCCACATCGCGGCTCACTATGAGAACCTGAGTGTGGCCCAACTGCTAATTAACAGAGGAGCCAATGTCAACTATACTCCCAAGAATGGTATCACCCCCGTGCACATAGCTTCTAGGAGGGGTAATGCGATCATGGTTCGGCTTTTGCTGGACAGAGGGGCCCAGATAGACGCCATGACCAAGGATGAGCTGACCCCTTTGCACTGTGCGGCCAGGAACGGTCACGTGAGGATCATCGATCTACTGCTGGACCAGGGGGCTCCCATCCAGGCCAAGACCAAGaatGGCCTGTCCCCCATCCACATGGCGGCCCAGGGTGACCACATGGATTGTGTGAGGCAGCTCCTTCAGTACAACGCTGAGATCGATGACATCACGCTGGACCACCTGACCCCTCTACACGTGGCGGCCCACTGTGGTCACCACCGCATGGCCAAAGTACTGCTGGACAAGGGGGCCAAGGCCAACGCACGCGCACTGAATGGGTTCACTCCCCTCCACATTGCCTGTAAGAAGAACCACATGCGCTCCATGGACCTGCTTCTGAAACACTCTGCCTCCCTGGAGGCCGTCACAGAGTCTGGTCTGACCCCCCTGCATGTAGCAGCCTTCATGGGCCACCTGAACATTGTGAAGAACCTGCTCCACAGAGGTGCTTCTCCCAATGCCTCCAATGTGAAAGTGGAGACGCCCCTCCACATGGCTTCCAGGGCAGGCCACTGTGAGGTGGCTCAGTTCCTGCTGCAGAACACAGCCCAGGTGGATGCCAAGGCTAAGgatgaCCAGACCCCTCTGCACTGTGCGGCCCGTATGGGACATAAGGAGCTGGTCAAACTGCTCCTGGAGCACAAGGCCAATCCTGACTCGGCTACCACCGCTGGCCACACCCCCTTACACATCGCCGCCCGTGAGGGACACGCCCACACCACCCGGATTCTCCTGGACGGGGCGGCCCAACAAACCAAGATGACAAAGAAAGGCTTCACTCCTCTCCATGTGGCCTGTAAGTACGGCAAGGTGGACGTGGTCGAGCTGCTGCTGGAGAGAGGAGCCAACCCCAACGCGGCTGGAAAGcagAACGGCCTGACTCCTCTACACGTGGCCGTCCATCACAACAACCTGGACGTGGTCAAGCTGCTGGTCAGCAAGGGAGGCAACGCACACAGCACTGCCCGGAACGGCTACACTCCTCTGCACATTGCAGCCAAGCAGAACCAGATGGAGGCGGCCGGATGCCTGCTGCAGTATGGAGCCTCTGCCAACGCGGAGTCCCTCCAGGGGGTCACACCCCTCCATCTGGCCTCACAGGAGGGCCAGCCAGACATGGTGGCCCTGCTCATCTCCAAACAGGCCAACGTCAACCTGGGGAACAAGAATGGACTGACCCCTCTGCACCTGGTGGCCCAGGAAGGTCACGTAGGGATAGCAGACACCCTGGTCAAACAGGGGGCATCAGTCTACGCAGCCTCACGGaTGGGCTACACAGCGCTTCATGTGGCCTGTCACTATGGCAACATCAAGATGGTGAAGTTTCTCCTGCAGCAGCAGGCTCATGTGAACAGCAAGACCAGAGTGGGTTACACTCCCCTGCACCAGGCCGCCCAGCAGGGTCATACTGACATAGTCACCCTGCTGCTCAAACACGGAGCCCAGCCCAACGAGATCACCACTAATGGGACCTCTCCTCTGGGCATTGCCAAACGACTTGGTTACATCTCTGTCATTGATGTGCTAAAGTTGGTCACCGAGGAGGCCGTTTCCGTGATCACCACAGAGAAACATCGGATGAGTTTCCCTGAGACAGTAGATGAGATATTGGATGTTTCAGAGGATGAGGGTGTCGCAGCGCTAACGTTAGGTGATGAGTTGCTGGGGATGGATGGTGCTCGCTACCTGAAGCTTGACGACCTCAAGGACCAGGATGATGATTTCCTGTCCCCTAAGAAGACCCTGAGAGACTTTGAGGGCGGCCTGGGCACCACGCCCTACTCTCCTGCAATTCCCAGAATCCCATGCGTGTCCCCTGAAACTGTCCTGCTTGAGGGGcacacccctgtccccttgcctaagGAGTATGATGAGGACTCTCTGATCCCCAGCAGTCCTGCTACAGAGACCTCCGACAATGTTAGCCCAGTGGCCAGCCCCATACACACAGGGTTCCTGGTCAGTTTCATGGTGGATGCCCGGGGGGGCTCCATGCGTGGCAGCAGACACCACGGGCTGCGTGTCATCATCCCCCCTCGGACCTGTGCTGCCCCCACCCGCATCACCTGTCGTCTGGTCAAACCCCAGAAACTCAACACCCCACCCCCGCTGGTAGAGGGAGAGGGCCTGGCCAGCCGTATCATCTCTCTGGGGCCCTCCAGTATGCAGTTCCTAGGGCCAGTGATAGTGGAGATTCCCCACTTCGCTTCTCTGGGTCGAGGGGACCGGGAGCTGGTGGTTCTGCGCAGTGAGAACGGCTCTGTCTGGAAGGAGCATCGCAATCGCTATGGCGACGAGGTGCTGGAGACCATTTTGAATGGCATGGATGAAGacCTGGAGAGTCATGAGGACTTGGAGAAGAAGAGAATCCGCCGCATCATCTCCACGGACTTCCCCCTCTACTTCGCTGTGGTGTCCCGCGTCCAGCAGGAGAGCGACCTGATTGGCCCAGAGGGCGGTCAGCTGGCCAGCATGCTGGTCCCTCATGTCCAAGCCATCTTCCCTGAGACAGCGGTCACCAAGAAAGTTCGACTGGGGCTGcaggCTCAGCCTATCCCAGACGAGCTTCTGACTCGACAGCTTGGTAACCAAGCGACCTTCAGCCCAGTGGTCACGGTCGAGCCACGACGACGCAAGTTCCACCGGCCAATAGGATTACGCATCCCGCTGCCCCCGTCTTGGAGGGAGAGTTCACGTGACGCTGGGGAGGGGGACACCACCAGCCTGCGCCTCCTCTGCAGTGTCATTGGTGGAACAGCACCAGCCCAGTGGGAGGACATCACTGGCACCACCAAGCTGATGTACACCAACAACTGCGCCAACTTCACCACCAACGTCTCTGCAAGgttCTGGCTGGCAGACTGCCCACGCACAGCTGAGGTGGTGACCTTCGCCAACCTGCTGTACCGGGAGCTGATGGCCGTGCCCTACATGGCCAAGTTTGTAATATTTGCCAAAATGAACGAGGCACGCGAGGGCCGCCTACGCTGCTACTGCATGACCGACGACAAGATGGACAAAACCCTGGAGCTGCACGAGAACTTCAGCGAGGTGGCCCGGAGCAGGGATATAGAGGTGATGGAGGGCATGCCTCTGCACCTGGAGTGCTCTGGGAACCTGGTGCCTGTGAGGAAGGCCACTCAGCAGGCACGCAGCTTCAGCTTCCAAGCCTTCAGAGATAACAGACTGCCCGTCTCTGTCAagGTCAGAGACAGCAATAAGGAAGCCTCTGGGTTCCTTTCTTTCCTGCGGAAGTCTACCAAGTATGAGGATGCACAGCACGTGCTGTGTAACCTCAACATCACCATGCCTCCCTGTGTCAAGGTTGTTGGGAGTGAGGAACGGAGGCGAACTCTGACCCCGTTGGCCCTGAGGGAGCGCTACAACGCTCTGAACGAGCCCGGTCTGGCTACAGTCAATGTCATGGAGAGGACCGAGCTCAAGATCTCCCTAATATCCGAACAGCTGGGATTGAGCTGGGCAGagttgGCACGGGAGCTGCATTTTGGTGTGGATGACATTAACAGAATCAGGGTGGAGAATCCTAACTCCCTCCTGGACCAGAGTTCAGCCCTGCTCAATCTGTGGGTTGGCCGGGAGGGCAAGAGGGCCAagaTGGAGAGTATATATGTAGCTTTGAAGAACATTGACCGTTCAGACATTGTGAGTTCCGTGGAGGGCCAGCCACAGGCAGGGGCCGGGGCCTCAGAGGAGGGGGCCTGCAGACTGGTTGACCACGACTCCACCCTGCTCTCCCCCAGTGTTATCAATGGTTACGGACTTGTGCAGGAAGAGCTGCTCTCCCCAGCCTCCATGCAGTACAGTCTGCCCTCTCCGCTGGGAGCTGAGCCCTACTGGCAGGAGGTCTCCAGCCTGGAGTGTGCCCCCATCGCCACCACCGAAGAAGACACCCTGATGGAGATGTCAGACGTGCAGGTGTGGCCCTCGGGGGTCAGCCCCTCCCTGGTCACAGTGGAGGACTCGTCCCTGGATGGCAGCAGTCGGGCTGACGACTCAGAGGGGGCCACCCTGTCCCTGCCCTTCAGCCTGAGGCGCCCCAGCAGTGGGGCCAGTGGCTCCATCAtggagctggaggaggaggaagaggaggaggaggaggaaggggaagtagaggaggaggcGCGGCAGGAGCTGGCGGACAGGGACAGGGTGAGGGCCAGCGGCGCCGTGCCAAAGGTCAACCTGAATGGCCAGCTGGGAGGTCAGAGGTCGGAGGGCAGGAGGGTGGAGGTAGCAGCATCAGTGGTGGGCAGCAGTGTGACTGGAGGAGGagcgaggggaggaggaggactaAGACAGAGTTCAGAGGAAGGGCTTTCTGTTGTTGCAGGGCAGCAGGTTTATGCCCAGCTGTGTGAGATGTCAGGACTGAGCCGAGCAATGGAGCACAATGGAGACAACAGggtGGTTGGGGGCGGTGCTTTCCAGCCGTACCTCCCCAACAAGGACTCCCTGCGCGGCTGGGCAGGGTCGCAGGCGCCCAGGCTGCCCCGGCAGAGTGTGGAGACGCTGATGATGTCACCAAGGTCTCGTGTACCCCAAGAGGCTCTGCTGACACCGGTGTGTGACTTGGGGGCATTCGGAGGTGCTGTGCAGGCACCTGTTTGGGACACAGCCCTTCGACAAGGTGTTGGGCTTCTCACCAAGAGGCAGGGCTCCAGGTTGTCATGCCTACCGACCACCTGCCGCTTCCTGTGCCTGGAGCAGGGACTTCCTGTCCATGCCTGCGATAGATAGGGCAATCTTTTAATTTGGTTTCAATCATAAAAATTCCAACCATCAAAACCCAAATGTTGACGTTATGGCACGTCATTATCTGAAATTGGCTTAATGGGGCAAAGTTGTGTTGTGTGGTTTGTAAACCTGTGTACTAATGTCATGTGGTTATTGTATGTGTTTTATCCTGATATTTTGACACAGATTGATGCTGATAAAGAGGACTATGCTGTTGAGTTCCTGGCTGAGGAGCAGTTGGTGGACGAACATGGAAACGTTGTCACTAGGGAGGTGGGGGTGGATGTGAGGAAGGGTGCTCAGTCAGTGAAGCGCACCAGTCTGCGGAGAgtaaaacactgaaacacacatacCCAGTCCTCAAGAACCGGACATCCACTGCCAAACCATCCTCCACAAACAAAACGCCAGGTGACAGAGGACAACAGGGAGGAGACTAGAGAAGACTGAAGGACTAAGATCAGCAAACaacaaatacaaacacaacatCATCTGCAGAATGACCCTGGATCGCCACAACAAGAAGAAACGAGAAGGAGATCTACTTGTAGTTTTGTAACATAAAACAAAGATACTTAACTAGAGTAGGGCATGATTTTTTTCTATAAAACGTCATAAAATCCAACCAGaaaaaaaagcaacaaaaaaGTGCTTCCTGTCAACTGTAATTGCATGATTGACTGCTGGTGCATGACCATTGACCTTTGAACTGTCATTATCTACAAACTCAATTGGTACAAGTTATGGGGCCGACCCAGGACTGACTGGGTCAGGGACGAGTTTAAGGACCTCCCACCCCCCCGCCCAAAAGGATTGGTTGGTGTTAGCAAGTTGAGTCTGGTAACACTACTGCCAAAAAAGCTAATATTGTTTCCGTCTTCAGATTGCTATGATACAGTCAATCCAATGCTGAGCTTACCAATGCTCCTTTCACTTGGACCCTATTTCCTTGTTATTCTATGTGATATATGCACTATGCTCtgtggatgtgtgtctgtgtgtgtatgtgtgtgtatttctacCGCATGTGTTCTCTCGCTTCTGGCTTGGCACTGAGCCGTGTCCTGATTGGTCAGTGCTCCTGTGATGTCACGGTGTGCTCAATGTGGGAATGAGAAACTCACCGTGCTCCCCTACTCGGgagcgtctgtctgtgtgtgacgtCTTTCCTTTGTGAACGCGCTTCTCGTGTTCCTTTAGCTCTGTTCACCCCAGTTCCACTTTGTCTGGCTTTGATAGGGACTAGCTTCCTCCCCCTGTTTTAGGAGGGTGTGCTTTATTCAGACAATGGGAATGTTTTTCCAGATGGgaacaaaaaaaaagtttgtcGCTTGATAGCATTGCGTGGCAGCCAGTGTATTCTAACATTAATGTCCAACAACACATCCCAGATTTACGGTAGCATGGGGTCCCCTTCCCCTCCTATCCCCCCTCTGCCATGTTGACACCACACTCCTCTCCATCaactcctgtagctccaacttaAATCTCTACCCAATCAGCTTCATCCACGcactctctcatcttctctccgtTTGCTGTGGCTATAGCACCTCACGACATCTCCCTTTTGTGGTTCACATTCAATTGTGCTTTTGTTTTGAGGGGGTGAAGCAGACGGGATTAATGATCAGTGTGGATATTCATATTCATGGGAAAGAGATGGAGGTAAATGTGGAGGTTTAGATGGAATGCTAGAGACTAGCATAGCTAAGCAAGTAaggacagactgacagatagCACTGTGATCGCCCAATTTAACACTGACCCATGAGCCCATGTACCCTGTACTGTGAacttatagacacacacacacacaccacataaatgcatacacacacacaaactcacacatatccttaatacacacatgcacacgcacatacaGTAATTCATTTATTGTGCCCTAGTTGTTATGAGAAGCCTGGTCGGACTCAGATTATGTACTTTGGTGTCTGCCACAGCAATAATATCAGACAAgaagggatatatatatatatatatatatatatatatatatgtgtgtgtgtgtacagtgggaGGGTGGGTGTTCTGTATCTGCACATTATGGTAGCATTTAAAGCATTTCTCTCTCTGAAATTGGTGCAGACAAATCAGAAGCATGCATGTATACAAAAGGTACAATCCAAGACGGTATACAAACAGTTTTCCCCTCACAAATGTGATCCTTTCAAAGCATTCACGATTGACATTTCGTAATGGTagctcctctgttcctctgaccTTCATGTTGTTGTATTAGCATGGTGGCACTGCCACCTGGTGTTACAAAGAGGTATCACAGACTAGATAACTGGATTAGCGCAGCAGCAGCTGGGGGGCAATATAGTAAAGGTTTCGGGAAAGGATTTGGTCCAGCACTTAACGTAGCAGATATTACCCAGGATATGCTAACTTCATACATTGAATCTTAGGAATGGATCTCTCATGGTAGCATTTATTTACTATTTATGTATGTAGTGTGGTTGGAGTGAATGTGACTGAATGATTTAGTGAATAGATTAGTAACACGTCACCGACACGTATTCCCTGCCAATCAGTGCACATTAAAACCTCATCTGTTATGCCACATATATCACATATCACTTATCATTCACTCTTATTCCACTCAGGTTTCAGTTCTAGCAGGATCCAAGTTTTGCCCTGTTTTTGAGTTCAGAGCCCTCTGTAGAAAGAGAACCATGGGTGTCAACATGAGTGCTGCGGAATcagtttgggtgtgtgtgtgtgtgtgtgtgtgagagagagagaatgtggtgGAGGGGTCATTGGTAACAGGTGAGGTGTAATTATAAAAGGGTAGCCTTTAGTTAGTATGTTGGTGGATTCGCTAGGTGAAAGGTCCGTGGTCTTTAAGCCTCACCTCTCCAGGTCACCTAATTTATCTTAAAACAGCAGTGTAGCTGATTGACTTATGTTGCTGCTTTGGGTCTGAATAGGCTAATGACGAAGAAAAGTGAGACTCTCAATCAGCAATTGATAAGTCAATCAACCTATCAATCAGGTTTTCCACAAGAACAAGACACTGATACCTGATATGGATGAGATATAGAGACCATAGTCCTGAAAGGTATATTCAAATGGATGTACAGCATGTTTGATTAATCTCAGATGAAGGGGATCTGTGTATGTGGGTTTAGAGGTTGACAAGATCAAACTGAAAGTTGAGCCGGTCCACAAGCCTTTGCACTGTGAGAACTGTAGACTCCGccagtatgtgtgtgcatgtgtgtgtgcttgtggtgTTCAGAAggttgaggaggagagatggacatgGTTTTAAAACTTGGGACACAACATGAAGACATGGAAATGATCATGTATTTTAAAGAGTATTTTAAAATTACTGTTGCAAAGAATAGAGATCACCTATAATCCTTTAGAATGGAAACGTGACAATATTAACGCAATATGATATTACTCTATACTAAGGAATGCAACTGCACACATGCACAGAAAATGTTTTTATGAaaatatatgtataaatatatgacaaaatatatttcattagaATGCTATGCACCCTTATAGAGTTGTTATGGATGTTCTTTAAGCATATTAACTAGACTATAGTATAGGTAAACGGCCACATCGTGGGGAATGTAGAGGCTTTGTAGGTATTTCAAattgttttcttttctttttttttattgtcaTGGAGAGAGGAAAAACAAACGTGAATATGTATTCAAGCCTTTGTTTCAATCAGATTTGATTCTGACATGAAGATATGTATAGGTCATCTACTCTGTACACCAGCTCCAACCATTTACAGAAATGAATAAAGATGTGAACATACCTGATGTGTTCTCTTACACATTTTGATGTGTTTGAGAATCAAATGTAAATTGATGTACGTTTGTAAATGTAAATTGTAAAtctatatgtatgtgtataaagGTAAGTACATTGGTGCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470017 lncRNA upstream 59457 18778034 ~ 18902632 (+) False G2160614
TU2470015 lncRNA upstream 115184 18775228 ~ 18846905 (+) False G2160614
TU2470012 lncRNA upstream 115184 18805737 ~ 18846905 (+) False G2160614
TU2470013 lncRNA upstream 115184 18805737 ~ 18846905 (+) True G2160614
TU2470016 lncRNA upstream 119287 18766145 ~ 18842802 (+) False G2160614
TU2470216 lncRNA downstream 23172 19089092 ~ 19089358 (+) True G2160789
TU2470223 lncRNA downstream 31389 19097309 ~ 19097687 (+) True G2160796
TU2470225 lncRNA downstream 37279 19103199 ~ 19103426 (+) True G2160798
TU2470243 lncRNA downstream 60319 19126239 ~ 19126465 (+) True G2160816
TU2470245 lncRNA downstream 64394 19130314 ~ 19130530 (+) True G2160818
XM_021590833.2 mRNA upstream 105936 18853270 ~ 18856153 (+) True LOC110509749
XM_021590830.2 mRNA upstream 138347 18808812 ~ 18823742 (+) True LOC110509747
XM_036967296.1 mRNA upstream 178137 18766479 ~ 18783952 (+) True LOC110509745
XM_021590817.2 mRNA upstream 519896 18392939 ~ 18442193 (+) True si:dkey-1d7.3
XM_036967639.1 mRNA upstream 581149 18358713 ~ 18380940 (+) True LOC110509741
LOC118945267 mRNA downstream 217 19066137 ~ 19067957 (+) False LOC118945267
XM_021590837.2 mRNA downstream 70508 19136428 ~ 19138160 (+) False LOC110509753
XM_021590212.2 mRNA downstream 104148 19170068 ~ 19204571 (+) False c6
NM_001124621.1 mRNA downstream 118610 19184530 ~ 19204490 (+) True c6
trnac-gca-162 mRNA downstream 153444 19219364 ~ 19219434 (+) True trnac-gca-162
TU2467776 other upstream 1770961 17189503 ~ 17191128 (+) True G2158499
TU2467775 other upstream 1770991 17189344 ~ 17191098 (+) False G2158499
TU2466780 other upstream 2608424 16350717 ~ 16353665 (+) True G2157602
TU2464720 other upstream 3868140 15018627 ~ 15093949 (+) True G2155696
TU2463446 other upstream 5026270 13933248 ~ 13935819 (+) True G2154512
TU2470148 other downstream 258 19066178 ~ 19068784 (+) True LOC118945267
TU2470204 other downstream 70749 19136669 ~ 19137568 (+) True LOC110509753
TU2471142 other downstream 544969 19610889 ~ 19616511 (+) True LOC110509766
TU2471217 other downstream 675894 19741814 ~ 19752743 (+) True G2161635
TU2471264 other downstream 729340 19795260 ~ 19797774 (+) True G2161678

Expression Profile