RNA id: NM_001124731.1


Basic Information

Item Value
RNA id NM_001124731.1
length 2800
RNA type mRNA
GC content 0.50
exon number 9
gene id ghr
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19227039 ~ 19249902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAATTGAATCAAGGGGAAGAGTGTACGAGAAAGAGAAAGCTATGCGTCTTGCTACAATATGTCATTTTTGGAATATAGTAACGTTTAAATGTTGAGTTTGGGGATTTTTTCCACCAAGGCGTGACCGTTTTTGGTGATGGTCTAGCAGATTGCAGTCCGTGGTTGAGACGAGTGTTCCGCTTGATCAAGTCTTGAAGAAACCAGCAGCGTTTTACAACTTGCTTATACAGGATGAACAGCATGGCAACTTCCCACATTCTCTTCATTTGCCTTCTCCTCATCCTAACAGTTGTGTCGCAGGAGCCGCCAACTTCTGAACAAGCCCTGCCCCAGATCCGCCCCCAGATCACTGGCTGTGTCTCCCATGACATGAACACGTTCCGCTGCAGATGGAATGTCGGAACATTCCAGAACCTCACAGAGCCCGGAGACCTGCGGATGTTCTACTACATCAATAACAAGAACATATCTCCCAAAGAGTGGAGTGAGTGTCCTAACTACATGGCTGACAGGATAGACGAGTGCTTCTTCAATGAAAGCTACACGAAGGTCTGGATAACCTACAGTGTCCAACTCCGCTCTGGCGATCAGGATAATCTCTATGACGAGGTCATCTTCACTGTGGAAGACATCGTGGAACCAGACCCTCCAATAGCGCTGAACTGGACCCTGCTGAATGTGGGTCTAACCGGGAGCCACTTTGACATCATGGTGAGCTGGGAGCCGCCACACTCTGCAGACGTGTCTATGGGCTGGATGACGCTACAATACGAGGTGCAGTACCGTGAGGTCAATTCAACACTGTGGAGGATGGTGAACCTTGAGAAGGGGAGGCAGCGGTCGCTGTACGGGCTGCGCACCAACACAGATCACGAGGTCAGGGTGAGGTGCAAGACGCTGGCATCCCGTAATTTTGGGGAATTCAGCGACCCCATAGTCATACACATCCCCACTAAAGAGTCCCGATTTCCAGTTACTGTCCTGCTTGTCTTTGCTGCCTTGGGTTTAGCAGTCATCCTAATACTGGTCATCTATTCCCAGCAACAGAAGTTGATGATGATTCTCCTGCCTCCAATTCCTGGTCCCAAAATCAAAGGAATCGACCCTGAGCTCTTCAAGAAAGGTAAGTTGGCTGAGCTGACCTCCATCCTGGGCGACCACCCTGACCTGAGGCCAGAGCTGTACTGTGAAGACCCCTGGGTGGAGTTCATCGAGCTGGACATGGAGGAGCCCAACGACAGGCTGACTGAGCTGGACACACAGTGCTTGATGGACCGCACGCCCTCCTCAGACTGTCCCCCTCTCACCATTGGCTTCGGAGATGACGACTCTGGCCGGGCCAGCTGCTGTGACCCTGATCTGCCTGAACCAGAGGCCTTTCCCCTCTCCAACACCAGCCCCAGCCTGGAGCCCTCTGGTGCCAGCACTGAGGCCAGCTCCCCAGTCCAGACCCCCACCACAGGGATGACTCTCTGGGCTGTCCCTGGCAGGGAGGACCTCTATACCCAGGTGAGCGAGGTGAGACCCACTGGCGAAGTGCTGCTGATGCCTGAGGAGCAGAGCAAGGTTGAGAAGGATGCAGAGGAGAAGGCTAAGgagggaaaggagaaagagaagccGAGGAAGGAGTTTCAGCTGCTGGTGGTGAATGCTGACGGGGGAGGTTACACCACAGAGTTAGACGCTGGGAAGATGAGTGCCAAACTCCCCACTGGGAGAGGCAGCCAGCCTGCCCCAACAGAGGATAGTAGGCTTGTGCAGGGACAGCCCTTTGGGGAGTACCAGAGCCTGTACTTTGAGGCTGAAATGCCCCCCATCCCACCTGCCTCGCCCGTTTCctcactgctccctctctctgtctacaccaTGGTGGAGGGAGTGGACAGGCAGAACAGCCTCCTTCTGAAGCCCAGCCCCCCACCTGCACCCCAGCCAGTCCTAACCAAGCTGCCCCTTCCTACACCTACACCAGAGGGGTACCTGACCCCTGACCTACTAGGAAATGTTACACCGTAACTCAGAGGTGTAGAGACGATGCTATTGCACACAGATCAGAAGTGGCATTGGAATTCAGTGACTATAAATCAAAGAGTAGGGTGCCAAATGGTATACCTCCAAAAATGAGGGAGGTTCCCCTGCCTGCCCCACCTCTTATCCTTCCTTCTCCCAACATGACCGCTACAGACATTTTGAGGTTTGGTAAGAAGGATGGGGAGGTCAGGAGAGGGGTTTGTTCTTCAAGGTCTGAActgatgtgccacacctgtctgCTAACACCTTAACTGAGAAAACAAAGGATATAGAAGGACAAGAAGGGATTATGGTCTCTCATAGGAGCTGGCTGTATGAAATATCTTAACATATTACTAATATTTTTGAAGAACATTATCTATAAGTTACTTTAATTGCCAGCACAAGATACATATAGTTAACTTAGTGGTGTTGATAATGTTTACAATAATCCCAATTATTGGTTCTTACAACTGAAAAGTATTTACAGATCGGAATATTGTCAAAAGGGAAACATTTGGTAAACAAGTGGGAATACACCATCTGTGTTCTGCCGATTGACTGTGGCTTCTCAACCAGTCTATAAGAGTAGGTCATTGTTGTTTTTCCATATATACACAAATGTGTtttataaaaaagtatatattttttctgcTTACCATGATGTACGCTTACAAAAAGGGGACTATCAAATGAGTGTCAGATGATCCTTCTGGGGAACTGGAAATGGTAATGGTTCTTCACTGTACAGCTATAATGTTATAAATAAACATATGTCACATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2470284 lncRNA upstream 44756 19181877 ~ 19182519 (+) True G2160856
TU2470282 lncRNA upstream 48812 19178118 ~ 19178463 (+) True G2160854
TU2470254 lncRNA upstream 82585 19144441 ~ 19144690 (+) True G2160827
TU2470250 lncRNA upstream 87445 19139615 ~ 19139830 (+) True G2160823
TU2470245 lncRNA upstream 96745 19130314 ~ 19130530 (+) True G2160818
TU2470350 lncRNA downstream 39468 19289370 ~ 19295540 (+) True G2160912
TU2470401 lncRNA downstream 107945 19357847 ~ 19362158 (+) True G2160962
TU2470979 lncRNA downstream 186198 19436100 ~ 19436303 (+) True G2161424
TU2470986 lncRNA downstream 189746 19439648 ~ 19439928 (+) True G2161431
TU2470991 lncRNA downstream 192677 19442579 ~ 19442814 (+) True G2161436
trnac-gca-162 mRNA upstream 7841 19219364 ~ 19219434 (+) True trnac-gca-162
XM_021590212.2 mRNA upstream 22704 19170068 ~ 19204571 (+) False c6
NM_001124621.1 mRNA upstream 22785 19184530 ~ 19204490 (+) True c6
XM_021590837.2 mRNA upstream 89115 19136428 ~ 19138160 (+) False LOC110509753
LOC118945267 mRNA upstream 159318 19066137 ~ 19067957 (+) False LOC118945267
XM_021590256.2 mRNA downstream 21722 19271624 ~ 19273362 (+) True LOC110509338
XM_021590842.2 mRNA downstream 30094 19279996 ~ 19281486 (+) True LOC110509758
XM_021590850.2 mRNA downstream 282290 19532192 ~ 19534613 (+) True LOC110509761
XM_036968265.1 mRNA downstream 285761 19535663 ~ 19560763 (+) True LOC110509762
XM_036967845.1 mRNA downstream 313619 19563521 ~ 19598808 (+) False tjp2a
TU2470204 other upstream 89707 19136669 ~ 19137568 (+) True LOC110509753
TU2470148 other upstream 158491 19066178 ~ 19068784 (+) True LOC118945267
TU2470138 other upstream 161503 19060543 ~ 19065772 (+) False LOC110509751
TU2471142 other downstream 360987 19610889 ~ 19616511 (+) True LOC110509766
TU2471217 other downstream 491912 19741814 ~ 19752743 (+) True G2161635
TU2471264 other downstream 545358 19795260 ~ 19797774 (+) True G2161678
TU2472832 other downstream 1948016 21197918 ~ 21221181 (+) True LOC110509811
TU2473579 other downstream 2350516 21600418 ~ 21601052 (+) True G2163804

Expression Profile