RNA id: XM_021590898.2


Basic Information

Item Value
RNA id XM_021590898.2
length 2002
RNA type mRNA
GC content 0.46
exon number 9
gene id lman2la
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20138956 ~ 20143762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGAATGGGAGGAGTCGTAATCTGAAATGGCCGCCGCCACAAACAACAACTGACAGATATTGAATATTCTCTCCGATATTTTTATTCGTCAGACCATGACTCTAAAAACATATTGGACGTTTGTGATTATTCTTATTACAACTTGTCGATCTTTTGCCGACGATGATAATCATGAAATGGAGGAGTTTCTGAAAAGGGAGCATTCATTGTCAAAACCCTATCAAGGTGTCGGGTCGTCCAGCTCCTCCCATTGGGAATTGATGGGCGATGCCATGGTAACCACAGAGCAGGTGCGCCTCACAACAGACATGCAGAGCAAGCAGGGGGCAGTGTGGAGCCGCATTCCCTGTCACCTAAGGGACTGGGAGTTACAAGTGCACTTTAAGATTCATGGCCAAGGCAAGAAGAATCTGAATGGGGATGGACTGGCAATTTGGTACACCAAGGAGCGCATGCAGAAAGGTCCTGTGTTTgggaatcaggaccttttcacaGGGCTGGGTGTATTTGTGGACACGTACCCCAATgaggaaaaacaccttgagGCACAGAAGACGAGGTACACCACACGCACACAGAGGATCTTCCCCTTTGTGTTGGCCATGGTGGGGAACGGAAGCATTAGTTACGACCACGAACGAGACGGGCGTCCCACTGAGCTGGGCGGCTGCAACGCCATGGTGCGCAACCTCAACCACGACACCTTCATCTTCATCAGATATGTCCGTCGCAGGCTCACGATTATGATTGACATTGATGGGCAGCATGAATGGAGGGACTGCCTGGACATACCGGGGGTACGGCTGCCCCAGGGCTACTACTTTGGAGCCTCGGCCGTCACTGGAGATCTCTCTGACAATCATGATGTGGTCTCCCTGAAACTGTACCAGCTGACTGTGTTACGCAGTGAGacagaggaaaaggaggaggaagatgagatcACTCTACCCAGTGTAGATAACATGGACCTACTAAAGAtgGGTGAGAATGAAGAAGGGTGGAGTAGTATTGCTATGTTCTTCACCATCCTCTTCTCCATGCTGGGCTGTTTCCTGCTCATCGTGGTCGGCCTCATCGTCTACAGCCACTGGAACGAGAACAGACGCAAACGCTTCTactgagacggagagagggggaaaagagcgGGAGGGAGGCCTCCCATCATAACCACTACTGTAGTCTGCCGACAACTGCACTGAGATATTGAAATGACTGGCAAGATGGAGACAATGTAACTGACCTCCCAATGTAGACCAATATGCTTGATGGACAGAGGTACCATTGGGACAACACTAATGAATCCTGGGAAAGACTGAGCAGCGGTGGATGCATTTCAACTACAGTAGCCAACCACACTGACCCCTGCCATGAGTAGACATACAGAAAGTTTGTCTGTCCCCACCCCTACTCTCACCAACCAGGCCTTACTCTACACAAATATAgagcatattattattattattattatgtacttACTGTGTGAAAATGACCTCCGTGTTGTCAGACAGTGCCATTGCTGGTTAATAGTTTGGTTGTCTTTTTAAGGGTCTGGGGAGATGGATTTATACTCAGTTTTAGCGTTTTGAATGTCAGAGACAAAGTAACCGATGTGTTCTGACTCCACATGACCAGGTCCCATCAGCGCTTGATCCGTGTCACACCAAAGATGTTTTCAATGGCCTATCTGGCAATTGATCCGTCACTTTTCTGCTTCGCTCTAGAAACAGCATCATGTCATATTTGCCTCTATGGTGCTTGCAATCAATGTAAGTCTTTGTGCGTTTCAATTGATTCAGACGGTTTCAATGAATTCTCATACTCAATTTTATTAGTTTGAAAAATGTATGGTTGCAGAGAATATGCTTTTGTTGTCAAACTGAATCTACAGTAGAATGCATGAAGGTGCTAGACTAGTCATTATTTCACCACTATTTATGTTAAGTGATTAGGTCGTTTTTCTTTTATTCTGTATATGAAATGAAAAGGTGACCAATCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2471840 lncRNA downstream 1222 20136815 ~ 20137734 (-) True G2162182
TU2471844 lncRNA downstream 12495 20126207 ~ 20126461 (-) True G2162186
TU2471812 lncRNA downstream 21937 20116294 ~ 20117019 (-) True G2162160
TU2471802 lncRNA downstream 30670 20108034 ~ 20108286 (-) True G2162150
TU2471789 lncRNA downstream 38597 20100143 ~ 20100359 (-) True G2162137
TU2471856 lncRNA upstream 8851 20152613 ~ 20152830 (-) True G2162197
TU2471989 lncRNA upstream 46484 20190246 ~ 20190722 (-) True G2162316
TU2472046 lncRNA upstream 106681 20250443 ~ 20250664 (-) True G2162366
TU2472052 lncRNA upstream 113551 20257313 ~ 20257520 (-) True G2162372
TU2472054 lncRNA upstream 118338 20262100 ~ 20262391 (-) True G2162374
XM_021590894.2 mRNA downstream 45261 20088225 ~ 20093695 (-) False LOC110509788
XM_021590893.2 mRNA downstream 46502 20088225 ~ 20092454 (-) False LOC110509788
XM_036967981.1 mRNA downstream 75173 20050795 ~ 20063783 (-) True LOC110509787
XM_036967979.1 mRNA downstream 75174 20050795 ~ 20063782 (-) False LOC110509787
XM_036967980.1 mRNA downstream 75174 20050795 ~ 20063782 (-) False LOC110509787
XM_021590905.2 mRNA upstream 617899 20761661 ~ 20772043 (-) True LOC110509794
XM_021590906.2 mRNA upstream 667974 20811736 ~ 20839531 (-) False LOC110509795
XM_021590908.2 mRNA upstream 667974 20811736 ~ 20869832 (-) True LOC110509795
XM_036967827.1 mRNA upstream 727710 20871472 ~ 20876271 (-) False LOC110509797
XM_021590910.2 mRNA upstream 727710 20871472 ~ 20878088 (-) False LOC110509797
TU2471773 other downstream 45296 20088230 ~ 20093660 (-) True LOC110509788
TU2471779 other downstream 55338 20083145 ~ 20083618 (-) True G2162127
TU2471632 other downstream 154177 19984545 ~ 19984779 (-) True G2162005
TU2470823 other downstream 861950 19276268 ~ 19277006 (-) True LOC110509757
TU2467320 other downstream 3492359 16643681 ~ 16646597 (-) True G2158111
TU2472094 other upstream 165427 20309189 ~ 20309802 (-) False G2162405
TU2472087 other upstream 165483 20309245 ~ 20309802 (-) True G2162405
TU2472112 other upstream 185986 20329748 ~ 20330138 (-) True G2162422
TU2473122 other upstream 826570 20970332 ~ 20976948 (-) True surf4
TU2473141 other upstream 1001387 21145149 ~ 21146337 (-) True rabepk

Expression Profile