RNA id: XM_036967827.1


Basic Information

Item Value
RNA id XM_036967827.1
length 1158
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110509797
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20871472 ~ 20878088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaccccaaacttttgaacgGGGTCATGGGACTTACATGGATGAAGAAAAACTAACAGCCTCTGTggcaggagaggtggagagggtgaaTAAGCTCGTCTGTGTACGGCCGCTCAGGACCAGGTTCAATGGGGAGGTTGGAGATGTGGTGGTCGGAAGGATCACAGAGGTGCAACAGAAGCGCTGGAAGGTGGAGACCAACTCCAGACTGGACTCTGTGTTGTTGCTTTCTTCTGTCAATCTGCCCGGAGGAGAGCTGAGGAGACGGTCAGCAGAAGATGAGCTCACCATGAGAGACTACCTTCAGGAGGGGGACCTCATCAGTGTATCCTCTGATCTGACCCTAACCAGTAACCTGGGCCCTTTTTCCTTCATCGCAGAGGTACAGTCTGTTTTCTCGGATGGAGCACTCTCTCTTCACACCCGCAGTTTAAAGTACGGAAAGCTGGGGCAAGGAGTTCTTGTGcagctatctccctctctcatcaaGAGACAGAAAACCCACTTCCACAACCTGCCGTGTGGGGCCTCCATCATCCTGGGCAACAATGGCTTTGTGTGGCTGTACCCCGCCCCAGGACAGCAGGACGAGGAGGCTGGAGGATACTACACCAGTCTGGAGccggtctctctctctgatcggGAGGTGATCTCGCGGTTAAGGAACTGCTTGCTGGCCTTGGGGGCACACAAGGTGCTGCTGTATGACACCAGTGTGCTCTACTGTTACGAGTCATCACTCCCACACCAGaTCAAGGATATCTTAAAACCGGAGGTGATGGAGGAGATTGTGATGGTGACGCGTCAGAAACTGGTGGAACAGGAGGGTTAGAGTATCAGATGCAACCTTTCTGTGACCTTGTCACAATGGAAGGTTGGTGTTCCCTGCATTCCAAGTCTAGGCACCAAGGCCTTAACTGTGTTAGGGACTGAACCCCCGCCCAAGGTCTGCACTCTCAACCAGAAGATACCTGGGTCGTTCCATTAAAAGCGCCTTTTGTGTGTCccttttgatattttaagtaaaaATTGTAcaccaatattgaatttgaattgttatattaaatgaagtgctcTTTAATGAAGACCACATGTAGCATTCAATAAATcagatgtttttttaaatatgaatAAAGGCTTGCTAAAGTGTAAACATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473061 lncRNA downstream 60272 20793913 ~ 20811200 (-) True G2163313
TU2472518 lncRNA downstream 216607 20654650 ~ 20654865 (-) True G2162816
TU2472386 lncRNA downstream 304650 20566610 ~ 20566822 (-) True G2162693
TU2472379 lncRNA downstream 310060 20561181 ~ 20561412 (-) True G2162686
TU2472282 lncRNA downstream 383914 20487286 ~ 20487558 (-) True G2162589
TU2473101 lncRNA upstream 4141 20880412 ~ 20880980 (-) True LOC110509798
TU2473108 lncRNA upstream 13467 20889738 ~ 20890839 (-) True G2163353
TU2473152 lncRNA upstream 58395 20934666 ~ 20935014 (-) True G2163390
TU2473157 lncRNA upstream 64999 20941270 ~ 20942268 (-) True G2163395
TU2473162 lncRNA upstream 81165 20957436 ~ 20957977 (-) True G2163400
XM_021590908.2 mRNA downstream 1640 20811736 ~ 20869832 (-) True LOC110509795
XM_021590906.2 mRNA downstream 31941 20811736 ~ 20839531 (-) False LOC110509795
XM_021590905.2 mRNA downstream 99429 20761661 ~ 20772043 (-) True LOC110509794
XM_021590898.2 mRNA downstream 727710 20138956 ~ 20143762 (-) False lman2la
XM_021590899.2 mRNA downstream 727710 20138956 ~ 20143762 (-) True lman2la
XM_021590911.2 mRNA upstream 4143 20880414 ~ 20885181 (-) False LOC110509798
XM_036967205.1 mRNA upstream 15539 20891810 ~ 20921213 (-) False LOC110509799
XM_036967209.1 mRNA upstream 15539 20891810 ~ 20921213 (-) False LOC110509799
XM_036967211.1 mRNA upstream 15539 20891810 ~ 20921213 (-) False LOC110509799
XM_036967207.1 mRNA upstream 16914 20893185 ~ 20921125 (-) False LOC110509799
TU2472112 other downstream 541334 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 561670 20309189 ~ 20309802 (-) False G2162405
TU2472087 other downstream 561670 20309245 ~ 20309802 (-) True G2162405
TU2471773 other downstream 777812 20088230 ~ 20093660 (-) True LOC110509788
TU2471779 other downstream 787854 20083145 ~ 20083618 (-) True G2162127
TU2473122 other upstream 94061 20970332 ~ 20976948 (-) True surf4
TU2473141 other upstream 268878 21145149 ~ 21146337 (-) True rabepk
TU2473694 other upstream 720280 21596551 ~ 21597495 (-) True G2163913
TU2473704 other upstream 736292 21612563 ~ 21612961 (-) True G2163923
TU2476609 other upstream 2664871 23541142 ~ 23546013 (-) True LOC110509827

Expression Profile