RNA id: XM_036967873.1


Basic Information

Item Value
RNA id XM_036967873.1
length 6009
RNA type mRNA
GC content 0.50
exon number 23
gene id dnm1a
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21004249 ~ 21096175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGCGTATTCTAAGAAGAGATCATCCCTCGGTGCTGCGTGGTAGAGAGTTGCGTATAGCTgtagaggagagtgaggagaggagaagcgtTCTGTGTAGAGGGGACACCGGGAAAGCGTAATCAATGAGGGTGCAAGCAATATTTATATAGAAGGCGGATTCCAAACGTTGAAACACCCTCATAACGGAAGGGTGACAAGCGCTCGGTTCCGAGGGAGAACGCTTTCCCTCATTTGTTTCTACTAAGAAGGAGCGACCGAATCCCTTGCAATCATGGGGAACCGGGGGATGGAAGACCTTATTCCTCTTGTGAATAAAATGCAAGATGCCTTCTCGGCTATCGGTCAAAATTCCCAGTTGGATCTACCTCAAATCGCTGTGGTCGGCGGGCAGAGTGCAGGGAAAAGCTCGGTGTTGGAGAACTTCGTTGGGAAAGATTTCCTTCCCCGTGGCTCTGGCATCGTCACCCGCCGTCCCTTGGTCCTCCAGCTGATCAACTGTCCCACAGAATATGCAGAGTTCCTTCACTGTAAGGGGAAGAAGTTCACAGACTTCGATGAGGTTCGTGGGGAGATCGAGGCGGAGACGGACCGCATCACTGGGCAGAATAAGGGAATCTCACCTGTGCCAATAAATCTCAGGGTCTACTCCCCGCATGtcCTGAATCTGACTCTGGTGGACTTGCCGGGGATGACCAAGGTCCCAGTAGGGGACCAGCCTGCGGACATTGAGCAGCAGATCAGAGACATGTTATATCAGTTTGTGACCAAGGACAACTGTCTGCTGCTGGCTGTTTCCCCGGCCAACTCTGATCTGGCCAACTCGGATGCCCTGAAGATTGCCAAAGAAGTGGACCCACAGGgtcAGCGAACCATTGGTGTGATCACCAAGCTGGATCTGATGGATGAGGGGACTGACGCCAGAGAAATTCTGGAAAATAAGCTGCTCCCACTGCGAAGAGGTTACATTGGTGTGGTGAACAGGAGTCAGAAGGACATAGATGGGAAGAAGGACATCACAGCGGCCATGGCTGCAGAGAGAAAGTTCTTCCTGACCCACCCTGGATACAGACACCTGGCTGAACGCATGGGCACCCCCTACCTACAGAAAACACTCAACCAGCAACTGACCAATCACATCCGGGACACTCTGCCGGGGCTGCGGGCCAAGCTGCAGAGCCAGCTGCTGTCTatagagaaggaggtggaggagtaCAAGAACTTCAGACCTGACGACCCCTCCCGCAAGACCAAGGCCCTGTTGCAGATGGTGCAGCAGTTCTCAGTGGACTTTGAGAAGCGTATCGAGGGCTCTGGGGACCAGATCGACACAGCAGAGCTGTCAGGCGGAGCCAAGATCAACCGCATCTTCCACGAGCGCTTCCCCTTCGAGCTGGTCaagATGGAGTTTAACGAAAAAGAGCTTCGCAAGGAGATCAGCTACGCCATTAAGAACATCCACGGCATTAGAACTGGCCTCTTCACCCCGGACATGGCCTTTGAGACCATTGTGAAAAGGCAGATTGGCAAGATCAAAGAGCCCTGCCAGAAATGTGTGGACATGGTCATTTCTGAGCTAGTCAATACCGTTAGGCAGTGTACTCAGAAGCTGGCTCAGTACCCCAtgctgagggaggagatggacaAGATTGTCACCCAGCATATCCGAGACCGCGAGAGTCGCACCAAGGACCAGGTGATGCTGCTGATTGACATTGAGCTGGCCTACATGAACACCAACCATGAGGACTTCATTGGCTTTGCCAATGCTCAGCAGAGGAGCAGCCAGGTGGCCCAGAAGAAGCAACCTGGCAACAAGCAGGATGAAATCATGgtgatcAGGAAGGGCTGGCTGACCATCAACAACATTGGCATCATGAAGGGAGGAGCCAAGGAGTACTGGTTTGTCCTGACCGCTGAGTCCCTGTCCTGGTACAAGGATGATGAGgagaaagagaagaagtacATGCTCCAGGTGGACAACCTGAGGCTGAGGGATGTGGAGAAGAGCTTCATGTCGAGCAAGCAGATCTTCGCCCTGTTCAACACTGAGCAAAGGAATGTGTATAAGGACTACCGTCAGCTGGAGTTGGCCTGCGAGACTCAGGACGACATAGATGGGTGGAAGGCCTCCTTCCTTAGAGCCGGGGTGTATCCTGAACGCGTCacggaaaaggagggcaagCAGAGTGAAAGTGGAGACGGAGAGAACGGCTCAGATAACTTCATGCACTCCATAGACCCCCAGCTGGAGAGGCAGGTGGAGACCATCCGCAACCTGGTGGACTCCTACATGGCCATTGTCAACAAGACCATCAGGGACCTCATGCCCAAGACCATCATGTACCTCATGATCAACAACACCAAGGAGTTCATCAACGCGGAGCTGCTGGCCAACCTGTACCACTCTGGGGACCAGAACAGCCTGATGGAGGAGTCCCAGGAGCAGGCCCATCACCGCGACGAGATGCTCCGCATGTACCATGCCCTGAGGGAGGCCCTAAACATCATCGGAGACATCAGCACTACCACTGTCACCACCGCCATGCCGCCGCCTGTAGACGACTCCTGGCTGAGGCCGGGGGGAAACAACTCTGGGGGCAGgtCCCCAGCCAGCAGTCCCACTCCGAACAGAAGGGCTCCCCCAGGTCCCCCTGGTCGCCCTGTCTCCCGTGGCTCAGCCCCTGGCCTCCCTCCTGGCCCCCCTGTCCCCTCTCGCCCAGGGGCCTCCCCGGACCCTTTCGGTGGGCCCCCCCCATCAGTCCCCTCCCGGCCTAACCGCGCACCCCCCGGTGTGCCCAGAATCACTATCAGTGACCAATGAGGACTAACGCTTCTGCCGAAGACCCCCGCCCTCACCAACCCACTAGACTACTGAGCCCCCTTCCCCTCCGACTCACCACCTACCCCACGGCAGAGAGACCAAGGACTGCAGAGCAACCTTCCTTACCTAGACCTgacccttctttctcctctcccttctctactAGATGACACAGTCacgtcacacacacgcacaaacccacagacagacagacacattgtaTACCCCGAATACAGAGAAATGCATTCACCCTCCACTGTATATTAAGGACCATTGTAGATAAGACTTcgaacacactcagacacacacatttacatgTGTAAGTAGTCACACACTTAAACGGACAGGGCAGTGTATGCGTGGGTGGATTCAGCAAATATGGACGAGAGGGTTAAGGAACGCTATGCTGAAATATTTTTTCTTTCTCACCCTCCCCTTCAGATGGCTATTTCTGGTTGCTgactttctttcttcctctcataTCTGAATTATATTTGTTTCTCTGATAATTTGGAATATTGATAATGATCTTTTTTGTTCTGGTTGACATGTTATTCTGTGTGTTGAATCTCTCTCGGGAGTAGATGCATTATCCATCTATCTAGGAAAGTGGAGTGGATCAGAAGGGATAACTGCATCTGAACAACAGCTTTCTTTTTGTTGTCTTCTGCTATGATCATCATGATCCATACTGGTCCCTAAAGTCACAGGCTCGGACAAACCTGACATAAATGGGCAAGGGCCCTTTTAGTCGGAAAAACACCCAAAGAGAAAATATACACATTAATGGTACTGACTCATGTGTCACAATGTGGTATCTATCTCTGTGATTTCTATGTATTATTTATGATACACTGATTCATGTGTCCTATTATATCTAACATCACAACAGTGTTTCCTCGCCTCTGAGTTTGGGGACATTTTCTCTCGTTATGTTTCATTCACTTGTTCATCCTTCACTTAATCTGGCTTCATTATGTCCTCTTTCCTATCTGTTTCTACTTGACTCTTTTTATTGAATAGCGGTCCAAGCAAGGGTGGGCCCTCTCACCCGAGAGCCCCCTGCCTCCTTTTGACTCCTAGAAGCCCCCTTTTTTGCCCCTTGGGACCCCCTGACACCCATCTCTTCTCTAACACTCCCCCCTTTCCACCACTCAGCCCCTACATGTGAATCCACACTATCCTTCACACACCAATCAGAGATCTCAGCAGCTCTTCACAACAGCCTCCCTCAAAGTAAGGGTGgagggggagcaagagagaggaaaTAAATCAACGCGAACCCCGCCCTCTCGGAGTGGCCATCCCATTCCTGTTCATGGGTAGAAAAACAAAatatctcttcctcctcttcagtaGGAGTGAGGGTGAGGAGAACATGTGGAACGTTCTGCATCTGTGTCCATGTCCTACCTTCAGTAGCCACCAGGCCTTGCGTCACTGTGAAGGCCCATTCTTATGTGATGTGATAACCATGATGATGATGTATTGCTGTGTCTGCAATGATACAACGATTGTTCAGGTGTTCAGACTGTGAACtggtcacaggaggttggtggcaccttaattggggaggacgggcaaggacatggtttccatgggtttgatgccattcccttCGCTCCGTTGAtcactatgagccgtcctcccctcagcagcctcctgtggatcTGGTGTAGATCGGTGTAAAATCCTCCTAAACCAGCTCCCTAAGGCACATTTGAAGACATGCTTCAGTCTCTGTACTCCTGCCACGAGTGCTGGGGGGGTTGTGAACTAGAGGGTCTCCTGCTAAAACCTGTGGCCCAACGTTGAGCAGTCATccgtctgtctcttctcctcctctcccacttgtCAATGAACCACTTCCCCACTAGTGAAACTCAGTACCTTAGCGAGGCGGGATCTAAATAGAAAGTGCAATATGTTCTTATTGGACGGCTTAATGAGAGCTGTCCACCAATCACACCAGACTCAGAGTAGATGCTCAGCCTGAGAGGAGGCAAGGAGACAAACAAGGCCCTAACGGTTCGTCGCAATACTGTCACATGGCATCCTTTCTCCTTTCCTCACAAGGAAAGCTCAAACATTGAAGTTGTTTTCAGGAAGACCATTTATAAGTGTTGCCAGTCCAAGATGAGATTTTTTTTGACCCTGTGTTTACAAGAGCAGTGACCCTAACAGGAGAACGTGTGTTGAATATCATTGGAACTGTGTAATAAGTGTTGGGGCGGGGGACACTGATTTTGGCATGGCTTATCAACTTTTTTCATTTTCTGTTCTttccttttttccctctctcaGTGGTCAAGGGGGTGAGTGAAGACGTCAGGTTTAAAACCACCAACAACCCAATAAGTGATGGTCTATATACAGAaacctatatacacacacacacctacctataCAGTCAGTGCACCTCTCCCGCTCCCATGTCACTCATGTGTTCCATTGCTGTTTGAGAGATGTGAGTTGACCCCCCTTTCTACCAGTGGACTCTGtagtttgttgtattttttttaccccgTTGGTAATAATAGTACATGGGCTCATTAACCTACCCACAAACCCCTGTTTCAGTATCCATATCGTACTCACCTCATACAAACCTACCCCTCTTCACAACACCCTTGAGTCTTAGCAACAGCCAATAAATAAAGCTATTATAAAATGAATTATTAAGAGTACATTTTATCATGGACATATCTTACTTGTGTAATGTATCCTGTGTGGTGCATCGTCTGAAACTGTGTTCCACTTGTGTAGACGTTAGTTGACATTGTATGAATACTGAATATTCAATTATTACAAATAAGTGACTGAGTGTGGTGTACAATGAAACATGACAAACATAAAGACAAACAAATAAGTGACTGAGTGTGGTGTACAATGAAACATGACAAACATAAAGACAAACAAATAAGTGAATAATGTTATATGAAATCCTTGGCTATGGATGTTGAGTATTGGCAGGGTGTTTGATTAGTAGTATGTAGAATAATTTGTCGCTTGTCTCTCAGTTTCTGTCCGGAgaggaaatgggggggggggcagagtaaatatttgtattctgtccTGCTGTGACGACTTTGTCCTGTATCTTATCTTACTGCTGTCGGTGGAATGTGTCTGTCCAACAGGACTGCTTTGTCAAGACATTAAAAGTCAGCGTACTGTCACCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2472611 lncRNA upstream 30975 20972262 ~ 20973279 (+) True G2162904
TU2472689 lncRNA upstream 123265 20880414 ~ 20880989 (+) True G2162978
TU2472557 lncRNA upstream 325116 20678492 ~ 20679138 (+) True G2162853
TU2472414 lncRNA upstream 413040 20590967 ~ 20591214 (+) True G2162721
TU2472407 lncRNA upstream 419830 20584220 ~ 20584424 (+) True G2162714
TU2472734 lncRNA downstream 31295 21127470 ~ 21132783 (+) True G2163023
TU2472815 lncRNA downstream 46709 21142884 ~ 21146376 (+) True G2163083
TU2472817 lncRNA downstream 51238 21147413 ~ 21148049 (+) True G2163084
TU2472824 lncRNA downstream 61020 21157195 ~ 21157414 (+) True G2163091
TU2472826 lncRNA downstream 63073 21159248 ~ 21159473 (+) True G2163093
XM_021590921.2 mRNA upstream 18977 20983463 ~ 20985277 (+) False cyh9orf16
XM_021590926.2 mRNA downstream 37234 21133409 ~ 21137594 (+) True LOC100135840
XM_036968257.1 mRNA downstream 63951 21160126 ~ 21389662 (+) False LOC110509811
XM_036968259.1 mRNA downstream 101752 21197927 ~ 21389662 (+) False LOC110509811
XM_036968258.1 mRNA downstream 119781 21215956 ~ 21389662 (+) False LOC110509811
XM_036968260.1 mRNA downstream 213926 21310101 ~ 21389662 (+) False LOC110509811
TU2471264 other upstream 1206480 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1251511 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 1387743 19610889 ~ 19616511 (+) True LOC110509766
TU2470204 other upstream 1866686 19136669 ~ 19137568 (+) True LOC110509753
TU2470148 other upstream 1935470 19066178 ~ 19068784 (+) True LOC118945267
TU2472832 other downstream 101743 21197918 ~ 21221181 (+) True LOC110509811
TU2473579 other downstream 504243 21600418 ~ 21601052 (+) True G2163804
TU2475443 other downstream 1740896 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 2029605 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 2419447 23515622 ~ 23525331 (+) True LOC110509345

Expression Profile