RNA id: XM_036967863.1


Basic Information

Item Value
RNA id XM_036967863.1
length 6226
RNA type mRNA
GC content 0.50
exon number 26
gene id golga2
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21096285 ~ 21122009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACGGTCAGAAGGGAGATTTTGCGCCTCTAGCGGGAAGATAGTTTCTTGCATCACCGACTGATCTCAAATTGATGACGTGGTGCGGTTCGTCGACCGGACGATAAGGATGGCCGACCAGAGCAGGCAAATCAAACTCGCCGCAGCCAAGAAAAAGCTGAAGGAGTTTCAGCAGAAGAGTTCTCCAGCcagtggaggagaaggaggaccaGGGGCCAAGAAGACGAGAAAGGTGAAGGGAGGGAGCCAGCCAGACACACCCTCAGCTGACCGACACTCTCCAGACAATATTCAGAGTATTCTGAAAGGTCTTAGTCAGACCAATGGATTAACTATGCCTGCCTATGGCAAAAGCCAGACCCACGTCCATGGGGAGGTGAGGGGGTCCCCAGTTACCCAGCTACTGGAGGACCCAAACGGAGAGGCCGGCCGCGGCTCTCCTGTGTCTAACCCTGCTAGCTCTGCTACTAACCCTGAGTGTGCCAGCCAATCCCACAACACTGACCTGCAGCAGAACTGCCCCCATGACGGTAATGAAAACCATGCGGATGAGAATAGaccCCTGTCGTCCACAGAGAGCCTGCGACAGCTCTCACAGCAGCTCAACGGTCTTCTCTCTGGGTCATCCACCACCTATATAAATGGAGACAGTGCTCCCTCGCCAGCCAATGAAAAAGAACTGGAGACCGAGCACTCTCAGGCGCTCACAGATCAGCTGCAAAAGGAGCGAAGAGAGTTTGAACAGAAGTGTGTGAAGGAGCAAGGAGCAATGCGGGAACagctacagGTCCACATTCAGACCATCGGCATCCTGGTGTCAGAGAAATCAGAGCTGCAGACCGCTCTGTCGTACACACAGCAGGCTGCCCGCcagaaaacagGGGAGGCTGAGGAGCTGAGTAACCGTCTCCAGGCCACCAAACAGAGAGTCTCTGAGCTGGAGAGAACCCTGTCCTCGGTCTCCGCACAACAGAAACAGTTtgacaagCATAACaaagagctagagaaagagagagacaacctGAGGCTAGAGGTGTACAGACTAAATAGTGTGAGTGAGGAGGGGAGGCAGCAGAGTTcagagctgtcagagcagctcaagCTGAGGGTGAGTGAGAACAACGCTATGAGACTGGACCTGGATGAACTGCGTAAGAGACTGGAGATGACTGACGACATGCTGCAacagTTTTCCAGTCAGTCAGGGCCTCCCAGTGCCAACCAGCAGATGCACTTACTACTGGAGGAGAAACTACAGATTGAGGCACACActgctcagTTAATGGAGTCGGTGGCCCagctgcagacagagagagaccgctACGCTGAGCAGATCCAGGAGGAGGGACAAGTATGGAAGGACAAGACGGAGCAGCTGCTCTCTCAGGTGACACTAGTagcagaggagagggacaggagcaTCAGCCAGATCCAGGAGCTTGAAGCCCATATCACAGATCTGAAGCACACTGCAGcccTTTTGTCTCAGGAGGGAGAGGCCCAGGCGGAGCCCCAGCCCTCAGGGCCCTCGGAGAGTGAATTGGCCCTCCAGGAGGCCCTCTGCTGCCTGCAGCAGGAGAGAGACTCGCTCAACTCACAGTTCCAAGCCCAGCTGCGTGATAACGAGCAGCTGAGTCGCATGTGCTCTGAGCAGGAGTCCCGTCTCTCGGAGCTGGAGCGTCATGCGGAGCGCGGAGCTGAGGATGCAGAGGACCGCAGGCGCATGCTGGAGGACGTGCAGAGTGACAAGGCCACCATCAGCCGCGCCCTGGCCCAGAACCGCACCCTTAAAGACCAACTAGCTGAGCTGCAGAACGGCTTCGTCAAactgACCAATGAGAACATGGAGCTGACCACTGCTCTGCAGTCAGAACATCACGTGAAGAAGGAGCTGGGACGCAGGATGGGACAACTACAGGAGGACCTGCACAATGTCAAGGAGCAGTTGGATTTGAAGTCGCAGGAGTACCAGGCACTGCTGGAGCAGCGGGACCAGGTAGTGGCCCACCTACAGCAGTACTCTGCAGGCTATACAGCCCTGGCGTCAGAGCGGGAGCAGCTCCACAGACAGTACCTGCAGCAGAGCCAGCTGATGGACCGGCTGCAGCATGACGAGACCCAGGGAAGGGTTCAGTTGGAGATGAGCCACAAACAGCTGGAGCAATACCAGGAGAGGCTGGAGCAGTTGTCCAGAGATAACGAGCAGTTGAAGGCTGAAGTCACAGAGCTGCTCAACAGCTCAGCCCTGGCCACACTCCCCAGAAACCGGGGAGACGGAGTGGAGAGCCAATCCCTGCAAGAGAGCCCACAAAAGTCCTCGATCGCTATCCCAGAAGACTTTGAGAGCCGCGAGGAGATGgaggagTTTGTGCGCGGTGCGGTGGCGCGTGTGGAGGCAGAGCGAGATGAGGTGAAGAGcagactggaggaggagaggagactgcaCTTCGCTGCCAGACACCAGGCTGCAGCACTCAGCATGGACCACGACCACGGTCAGTGTCACGGTCACAGCCATGATGACCACAGTCACCTTGAAcacacagTCTCAGGTTCAGAGGGTGTACCAGTGGAGGTACATGAGGCCTTGTATGTTGCCATGGAGAGGTTGCAGCAGCGCTTCACCTCTCTGATGCAGGAGAAGGCTGACCtgaaggagagggtagaggagctGGAACACCGCTGTATACAGCTGTCTGGAGAGACTGATACTATTGGAGAGTACATCACCCTTTACCAGAACCAGAGAGCCATCATGAAGCAGAAACACACGGAGAAGGAGCAGTACATCAGTATGTTGGCCCAGGACAAAGAGGAGATGAAgGCCAAACTGGCAGAGCTGCAGGACCTGGTGATGAGGTTGGTGGGCGAGAGGAACGAGTGGTACAGCCGCTATACTGGGGCGCTGGCTAGCGCTGCGGCTAACCCTGACCTGCTGCCAGCCGGAGAGGAGCAGATCCAGGCTCACCACAGACGCATGGAGCTCAACGCTGTGGATGGACAAGaGTCTGCGGATGTAAGGTCAGCCGTGAAGCCTGACTCCACCGACCCCCCTCACGGTGGCCCGTCAGACCAGGTCCAGGGGCTCCCCTCAGACTCCCAGGCTCTGATGAGGCCCCAAGAGGACGGCACGACCAGGCAGATCATGCAGCTGCTCCAGGAGATCCAAAACCCCCAGGGGCCCCGCTCCGTGCCCTTCCTGGGGGACAACCCCTGCGTCCCGTTCTTTTACCGGCCCGACGAGCAGGACGAAGTCAAGATCCTGGTGGTCTGATGATGATGAGACTGTGGTGCTACGTTGGAGGATCTCTGAACAGACATACCATTCCACCACGTCACACTCCACTTAGGTCATCTAGGATTTACACGTACACACAGTTCTGGGTatactgtctctcacacacatgcacactcactctctctacttTCTGGGTGAGGTtgtttcctctccttccttctcactCTTCCTGTTGAGTCCTTGGCTGGTCTCGCATGCCGCTTCTTTTTTTTCATTGCACTAACAGAGTGACTTAAGGATGTGAACTCAGTGTGTGTGGCGGCTTTCCTCTCCTcgtacacctcctcctccttcacaacCTCCTTACTTGCAGTGTGAATGTTTGTCTGCTCTGTCTCCTTTAATTGGTATTTAATACCATTCGATGATTGGGAAGTATTCCACCGGATGCTATTGAGATTCTTCCTGTGATTCTCTTGatggagagatgtttattcctgcaCATtgatccctccgtctctctccccttctctgccATTTGAACCATAGGCGCAATAAAGTATCTCTGTCGCCTCTCCCTCAGTCATTGTCTCTTATAGGAGAAATGTAAGGCTTTGAGTGATACGTTAGCGGCAACAATGGAATacatggaacggtatcaaacacatggaaaccacatgtttgactctcaTTCCATTGATTCAATTTCAGCTATTACAATGAgcatgtcctcctatagctcctcccaccagtctccACTGGTACCTTTATGTTAAGGAACTAACTCCCCATTCACAATGTGTCTGACTCTGGAGCAGAACTGGgctagtctgtctgtgtgtttggtaGGAGAGACAGACATGGCTTGGTTTCGGCGCGTGGGCTGTCTCAATTAATCTCCTCGTCGCCTCTCCTCCATGACCACTGATTGGCGAGTAGACTGACTCACTCAGACAAGTGGTCATGAATGGAGGAGTACCGTATCGAGGCACAGCCCTTGGTAGCTGTTGGTATGTTCTATGGCAGTGGAGTGAGTGAGTTGTCTGAGTAGGACAGGATGGCAGGTGGGGTAGAGGAGGGCATGACGAGTTGGGTACAGTACATGAAGGAGGTAAGAGGCCAGGCTCGAGCCTTGGCCTACCTGGGGCGgaagtcagtcaggaaagcattGGTAAAGACACTAGCATTTGGAGTGATGGGAGCAGTTTGCACTTTTCACTTCTAAGTAGGATACGCCATAGGACATCAGGAAAGAGAGGAACTAGCATGTAGACACATGGCTGCTCACCCCTACAACTACCTTGTCTATCCATCCTCTTTTATGTGGAAACACTGAAATTTGAACATATGTATGTACACTAGAGCGTTATCTTATTTATGCACACGAGCCAGTCAACTGATTTGTAATTCCTCAAGTTTTCTCTGCGGTTATTTATTTGAGGCCCCATTTCATAGCACCAGTTGATCATCTCTTGTTTATCAATCTTTCAATTATGTTGTGCTTGTTGCCCCTCAACATATCTCATTTATAATTTAAGTCGCTCCCTTTGAGACTGGATGAAGATGGTGAGTCTGTTTGATAAATGATTCAACCTCAATTGTATCCTCATGATTTGAAAGGTAGTTGTCTCTTCTCTCTAAAGTTACATGGGATTTTGCTGTAGGTTATTGCACTAAAATTGTACAGAGCTTCTAATCAAACCCTGTCCCATCTCACTTACTTTTGGAAAGTAGCTTTTCTATGGCAGATCCATTCTGACATTTGGTTTCTGTACTTGGGAGCCCTATGATGTCATCATGTGCACTTTGGCACATCGGGGCTCAGGGTTCCACGAATGAAGACAGAGTGTGTGTTGAAGTGACTGAAATATTGTGTGTGGTGCGCGCGCAGTGTGCACTAGGAGGATGTGTAGGCATGTACAAATGAATAGAGGGTTGTAATCATTCCAGTAACACGGGCAATGGGCAATGGGGGTAAGCTCTGCTGTTTGATTGACAGGTGCAGGAAGGTCCTCTGTTTTTAGATAACCTTACAATGATGACCCAAGTAAAGATAAAATTGCCATAGGCACATCTCTGCCACCCCACAGTTTTTGGGGAAATGTGTGTACTCCCAAAATATTTAGGATATTTTTGAATTTTTATGCTTCCAGTGTATCTCTGACTGCCAATATCCACATTTGATTTTTATTCAAGAATGGAAGTCTTTAAGCATGTCAAAAACAGTCTGGAAAAAAGGTTTTGGTGATGCTATGTGAGGTGTATTAAATGAGATATAGAAATGAGTggttctggagagagttttctggtgtgtgtgtgtgtgtgtgtgtgtgtctgaagcaAAGCACTTTTTGTAGTAGGACTTGACATGATTTCTGTTGAAAGTGATCCCATCTGAATATTTAAATTCCTGGCTTTCTTAGCATTCTATTTTCCTTTAGAGAGAGAACTTTTGTTTTGGGAGTGGTAAAACCAAGAGAATATGTTATAGTCATTTACAACTATTGTTTTGAAGGTGGTGACGAGAGAGTAAAAGTAACAGGTGAAATAGTTTTTCCACGCTTTCTAATTCAAACTGTTGAATGAATGTGTGGGATTGAGCACATGATGATTAAGAGACAGAGGTGAACTCCTTCTGTTTAAAGGgactgtatatactgtaactgTGTAACATATTGTATATTCATTCTGCCTGGTGTGTGGGAATAAGTGTAATGGCTGTTTGTAGTGTTGCTAGCAGCCCAGAGggcttgtctgtgtgtctgtctgatccATTGTTGGCTTCAGGACACACACGGACAGCTGAAGTGAAGGGGTGGGGGTACCGTCTGTGATTTAAtacaaaggttaaaaaaaatctatttatttgtaataagtATCAAAACTAATCAGTTTTAATGCAATGTAGGATCGTTGTGAGAACAAAATGGCTTCCGGCAGTATATTTCTGATGTGATTTCTCCTGATTAAAAGTGATTGAGCAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473137 lncRNA downstream 58301 21033724 ~ 21037984 (-) True G2163375
TU2473162 lncRNA downstream 138308 20957436 ~ 20957977 (-) True G2163400
TU2473157 lncRNA downstream 154017 20941270 ~ 20942268 (-) True G2163395
TU2473152 lncRNA downstream 161271 20934666 ~ 20935014 (-) True G2163390
TU2473108 lncRNA downstream 205446 20889738 ~ 20890839 (-) True G2163353
TU2473135 lncRNA upstream 2219 21124228 ~ 21132785 (-) True LOC110509343
TU2473217 lncRNA upstream 31768 21153777 ~ 21154014 (-) True G2163452
TU2473220 lncRNA upstream 38106 21160115 ~ 21160344 (-) True G2163455
TU2473226 lncRNA upstream 52945 21174954 ~ 21175233 (-) True G2163461
TU2473227 lncRNA upstream 53642 21175651 ~ 21176000 (-) True G2163462
XM_021590918.2 mRNA downstream 98188 20985126 ~ 20998097 (-) True ciz1a
XM_021590920.2 mRNA downstream 98213 20985126 ~ 20998072 (-) False ciz1a
XM_021590917.2 mRNA downstream 113257 20981279 ~ 20983028 (-) True LOC110509803
XM_036967820.1 mRNA downstream 116252 20978919 ~ 20980033 (-) True LOC118945306
XM_021590914.2 mRNA downstream 118253 20970332 ~ 20978032 (-) False surf4
XR_005040438.1 mRNA upstream 2150 21124159 ~ 21127780 (-) False LOC110509343
XR_005040439.1 mRNA upstream 2150 21124159 ~ 21127780 (-) False LOC110509343
XR_005040437.1 mRNA upstream 2150 21124159 ~ 21127964 (-) False LOC110509343
XR_005040440.1 mRNA upstream 2150 21124159 ~ 21127964 (-) False LOC110509343
XM_021590928.2 mRNA upstream 16209 21138218 ~ 21146401 (-) False rabepk
TU2473122 other downstream 119337 20970332 ~ 20976948 (-) True surf4
TU2472112 other downstream 766147 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 786483 20309189 ~ 20309802 (-) False G2162405
TU2472087 other downstream 786483 20309245 ~ 20309802 (-) True G2162405
TU2471773 other downstream 1002625 20088230 ~ 20093660 (-) True LOC110509788
TU2473141 other upstream 23140 21145149 ~ 21146337 (-) True rabepk
TU2473694 other upstream 474542 21596551 ~ 21597495 (-) True G2163913
TU2473704 other upstream 490554 21612563 ~ 21612961 (-) True G2163923
TU2476609 other upstream 2419133 23541142 ~ 23546013 (-) True LOC110509827
TU2477392 other upstream 3161541 24283550 ~ 24286383 (-) True LOC110509849

Expression Profile