RNA id: TU2473135


Basic Information

Item Value
RNA id TU2473135
length 2338
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC110509343
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21124159 ~ 21132785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACCACTTGTGTAAACAACCGTTACAATCTGTTTAACAGTAGCTGCCTATCTTCTGTTAAATTGCAACGAAACCGTTTATCAGGTGACATACAGTTTACGTTATCTTTATCAGCATACGACGGCACAGCTAGCCAGCTCACCAATGATTTCTAGGCTAGTTTTGTGTACTTTTGATAACCGTAGACCATATCCTTTTTTATGATCGTGGTAGCGCTACGTTCATCCACGAGCGCCTTTGTATGTCAAGTGAGTAAGGGGCTTTGGTCAACTGATGTCCACTCGTTATTCTGTGAGGGTTCGATCACTGGGAAAAGGATACAACTTGCATCAACAAGCTGACAGAAGGCCTGACCGAGAATCCTCTATTCTGCAAGCTCCTGGTAACGCTGTTACAGCATGTGGACCGCCTCAGCCTTACTGTTACACTGAAGAGAGAGCTGGAGAAGGCTGAGAGAGACCTGCAGACAGAGGCTTAATGGGCTGTGTTCAGAGAGCCTGTACAGGCTACTGCAGGAGATGATCCAGGAGCACTGTGTCAGAAAGCATCACTCCACTGTGCCTCCAGAGGACGACACTGTACAATACAGAACAGTACTCATTGCTCATTGCTGAATGGACTCTACTATACATAACTCTAGACTGCTCTATTCTTGTTGTGTGTCTGGCAGAGCAACACACAGTACACTTAGTACCATAATCCCTCTTTAAGGTTACATCTATTAATGCACAAATAATGTATATAGGCCTAGATACAAGTAGATCATTGGTGAAGTAGTTTGACCACCCAAGTGAATTTGATTTCCAAAAGGTTACTTTTTGTTTACATTGATCCTCCAAAGTACTGTATAATGTTAGAATAAACCTAAATCTTGTTTCCCCCTGGCAGTTTTATGAGACTGTGGAGCAGTGTCTGGTGGTGGCCCAGTGTGTCAGGTAGTTGGACCCTAGTGACACCACCAGCCAGGACCAACCTCCTGTCCTAGGACTGAGTGTCCAACAGGTGCTGTAGCTGATGCCACAAGAGGAGAGGGTGAGAGTGAAAGGCTGAAGAACATGAAGCTGTCTCGCTTGTCTGCCCTTCTGGAAAGCGAAAGGAAAAGAGCAGAGAGTCTGAAGGGGAATAGCCGTGAGTGCCGCCCTGCTGCAAAAGCAGACTCCCTGCTACCTCTCTGTAAGAGACTCTCAACACTTGGTTTGATGTATTCTTAGGTTTGTCTCACGTGTTGCGACCTTCACTCACGATCGACGTGTTTTCTCCAGGAGCTGTTAGGATGCATTCAGATTCTCCAGTCACTTATCCTTGACCACAGGCTAAAAGCCCAGAAATAACTTGACAGGAAACAGTTTGAGTACTTTGAGGCCAAATGTGAGATCATCATGCAGAAGATCAGGTGTGATTAGCCCCTCCTGTTTACATCTACTCTACACTGGGCTCCTTCAGATGCAGTTGACTGTTAATGAGTGTGAGAAATTGGTATTTCATGCATGTCCATCAGCAATGTTCCGTTTTCGTGTCTCTTTTACATTTCTTAAATATGTCTCTTCACAACAGAGGAGATATGTTGGAAATTCAGCTGGACACCAACACAGCAGACACAATgtcagcctatagaataacaagGTGAGTCAAATGCTGCCCAGCAACTCAATGTCATTATCATATCAACCACTCTGGGGGCTCTCAACACCTACTCGTCATTCCCACTCATGTTGTTCTTTTTGACAGCTTTGTTCATCTACTATGCCTTTCCTTGCCTAAACATCAGATGGTTaccatggttactacatgaatatCAGTCTGAAAGAAGTCGCTGTAAAAAATACTCATTATTCTTTACAAGGCAGAATAttaaataaaattatatttacaCTTACTTTACCGGTTGTGCATGCTGTCGGTCCTTTTGGCGGTAGGTGGAGATAGGGTATCCACAGGAAAGCGTTGTTTACCAGACTTTTTGCGCCGCCAATAGGTTCTGTCACTTGTATTTTTAATCTGTTGACACATTGCACTTGATGACCGAAGCACATTTCCTGGCAATCAACTGTTAGTGTTTGTCATTTGTTTAGGCTCGCCAATATTGTGCAAGTCTTTGTCACGTGCAAATTGTAACAGGAATGAAAATGAAAACCGGAAATACAAACTATATACAGACATAGCCGTGGAAAGTAGTTTGGGGGTGCAGtgatttattaaatgttttatgcCATGGGGGGAAAGATGAATTGCCCCCACTGAAGAAGTCTGTATCgatccactaatacaggactagtaaaggcccagtgcactacttttgttaaACTGTTTTAACTAAATGTATTTGAGTGTTTTCCAG

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:0070652 HAUS complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473137 lncRNA downstream 86244 21033724 ~ 21037984 (-) True G2163375
TU2473162 lncRNA downstream 166251 20957436 ~ 20957977 (-) True G2163400
TU2473157 lncRNA downstream 181960 20941270 ~ 20942268 (-) True G2163395
TU2473152 lncRNA downstream 189214 20934666 ~ 20935014 (-) True G2163390
TU2473108 lncRNA downstream 233389 20889738 ~ 20890839 (-) True G2163353
TU2473217 lncRNA upstream 20992 21153777 ~ 21154014 (-) True G2163452
TU2473220 lncRNA upstream 27330 21160115 ~ 21160344 (-) True G2163455
TU2473226 lncRNA upstream 42169 21174954 ~ 21175233 (-) True G2163461
TU2473227 lncRNA upstream 42866 21175651 ~ 21176000 (-) True G2163462
TU2473229 lncRNA upstream 48668 21181453 ~ 21181683 (-) True G2163464
XM_036967860.1 mRNA downstream 2219 21096285 ~ 21122009 (-) False golga2
XM_036967861.1 mRNA downstream 2219 21096285 ~ 21122009 (-) False golga2
XM_036967862.1 mRNA downstream 2219 21096285 ~ 21122009 (-) False golga2
XM_036967863.1 mRNA downstream 2219 21096285 ~ 21122009 (-) False golga2
XM_036967864.1 mRNA downstream 2219 21096285 ~ 21122009 (-) False golga2
XM_021590928.2 mRNA upstream 5433 21138218 ~ 21146401 (-) False rabepk
XM_021590927.2 mRNA upstream 5433 21138218 ~ 21146410 (-) False rabepk
XM_021590929.2 mRNA upstream 5433 21138218 ~ 21146491 (-) False rabepk
XM_021590930.2 mRNA upstream 5433 21138218 ~ 21146494 (-) False rabepk
XR_005040529.1 mRNA upstream 387092 21519877 ~ 21525513 (-) True LOC118945362
TU2473122 other downstream 147280 20970332 ~ 20976948 (-) True surf4
TU2472112 other downstream 794090 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 814426 20309189 ~ 20309802 (-) False G2162405
TU2472087 other downstream 814426 20309245 ~ 20309802 (-) True G2162405
TU2471773 other downstream 1030568 20088230 ~ 20093660 (-) True LOC110509788
TU2473141 other upstream 12364 21145149 ~ 21146337 (-) True rabepk
TU2473694 other upstream 463766 21596551 ~ 21597495 (-) True G2163913
TU2473704 other upstream 479778 21612563 ~ 21612961 (-) True G2163923
TU2476609 other upstream 2408357 23541142 ~ 23546013 (-) True LOC110509827
TU2477392 other upstream 3150765 24283550 ~ 24286383 (-) True LOC110509849

Expression Profile