RNA id: XM_021590928.2


Basic Information

Item Value
RNA id XM_021590928.2
length 1429
RNA type mRNA
GC content 0.52
exon number 8
gene id rabepk
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21138218 ~ 21146494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACAGCACACAGACTCTTCACCTGCGCAATATCCATGACGACAGCGCTGTTACGTCGTTTACGCGCGGACACGACATTTTGTTGTTAGCTAGTTGGAAAAGCAGCTAGTACATATTTTCGTGCAGCTAAACCGTCAACATGTCTTTATATTGattaatgtagctagctatattatACATCATATAATTGAAATAGCAGCTAAACGACGTGCAACAGATAACACTGAGCCTTCGAACGTGGAAAAATGGAATTACTTCCTGTGCTGGAACCAGAGGATAAACCACGAGCAGGACTGTGGTATGCTATGATACCCAGAGGAGGTGGTCCAGGAGTTAGTGTGGGCCACACCTGTATATACATCCCCTCTGAGGATGATGGCAAGGGGAAGATCCTGATCATAGGAGGAGCCAACCCTAATGGCAGCTTTTCAGAATCCCATGTCATAAACCTGGACAGTCACGAGTGGGACATTCCTGAATGGGAGGGTCTGGAGGCACGGTATGAACACTGCAGCTTTGTCCCTGAGAGCTGTCCACAGAGCCTGTGGGTGTTCGCTGGGGCACAGCAGAGTGGCAACCGCAACTGTGTCCAGAACCTACAACTCACAGGCGGTGGGTTGTGGAAGGGTGTAGAGGTGAAAGGGACGCCCCCCTGTCCCAGGACGTATCACACTAACTCAGCCAGCGTCGGGGACCGACTGTTTGTCTTCTCTGGAGGGGACTCAGGGGCCACACCTGTCTCGGACCCCAACCTTCACGTCTTCGACACAGTTTCCTGCACCTGGTCTCAGCCAGAcacacagggcagacatcccCCTGCAAGACACGGCCACGTGGTGACTGCGGTAGGACCCAAAATCTATATCCATGGAGGCATGGCAGGAGAGAAGTTCTACAGCGACATCTACTCTCTAGACACCAGCAGTATGAAGTGGGAGAAGGTCCAAGCCAAAGGAGACATCCCCCCGGGGGTGGCTGCCCACTCGGCTGTGGCCCTCGGAAAGAACATCTACATCTTTGGAGGGATGACCCCAGAAGGGGCCAGCAATGCAATGTACAGATTTCAGTGTGACAAACAGCGCTGGACCCTGTTGAGGTTTGAAGGGAACATGCCACCCAACAGACTGGACCACTCCATGTGTGTCCTACCCTGGAGAGTAAGGCCTGAGCAcaccagtggagagagagaccaggcccagagctcctcagcgtCAGGGACCGTACAGCTGGCATTTGTGTTTGGAGGGATGGACACTCAGGGGGTCATACACAGTGACTGTGTTGTAACTGTCTTAACGTGACCTTGATAGCTACTGCTCTGGGAAATACCGTGTGTATGTGCCTGTATGTTTAACTGTTGGTCAATAATTGTTGCAGTTCAttttagcgccacctttttcaaATAAATCCAACCAGTGTCATAAGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473135 lncRNA downstream 5433 21124228 ~ 21132785 (-) True LOC110509343
TU2473137 lncRNA downstream 100234 21033724 ~ 21037984 (-) True G2163375
TU2473162 lncRNA downstream 180241 20957436 ~ 20957977 (-) True G2163400
TU2473157 lncRNA downstream 195950 20941270 ~ 20942268 (-) True G2163395
TU2473152 lncRNA downstream 203204 20934666 ~ 20935014 (-) True G2163390
TU2473217 lncRNA upstream 7376 21153777 ~ 21154014 (-) True G2163452
TU2473220 lncRNA upstream 13714 21160115 ~ 21160344 (-) True G2163455
TU2473226 lncRNA upstream 28553 21174954 ~ 21175233 (-) True G2163461
TU2473227 lncRNA upstream 29250 21175651 ~ 21176000 (-) True G2163462
TU2473229 lncRNA upstream 35052 21181453 ~ 21181683 (-) True G2163464
XR_005040437.1 mRNA downstream 10254 21124159 ~ 21127964 (-) False LOC110509343
XR_005040440.1 mRNA downstream 10254 21124159 ~ 21127964 (-) False LOC110509343
XR_005040438.1 mRNA downstream 10438 21124159 ~ 21127780 (-) False LOC110509343
XR_005040439.1 mRNA downstream 10438 21124159 ~ 21127780 (-) False LOC110509343
XM_036967864.1 mRNA downstream 16209 21096285 ~ 21122009 (-) False golga2
XR_005040529.1 mRNA upstream 373476 21519877 ~ 21525513 (-) True LOC118945362
XM_036967228.1 mRNA upstream 733226 21879627 ~ 22056689 (-) False LOC110509815
XM_036967227.1 mRNA upstream 733226 21879627 ~ 22337506 (-) False LOC110509815
XM_036968207.1 mRNA upstream 1447200 22593601 ~ 22594656 (-) True LOC110509818
XM_021590941.2 mRNA upstream 1690653 22837054 ~ 22957768 (-) True LOC110509819
TU2473122 other downstream 161270 20970332 ~ 20976948 (-) True surf4
TU2472112 other downstream 808080 20329748 ~ 20330138 (-) True G2162422
TU2472094 other downstream 828416 20309189 ~ 20309802 (-) False G2162405
TU2472087 other downstream 828416 20309245 ~ 20309802 (-) True G2162405
TU2471773 other downstream 1044558 20088230 ~ 20093660 (-) True LOC110509788
TU2473694 other upstream 450150 21596551 ~ 21597495 (-) True G2163913
TU2473704 other upstream 466162 21612563 ~ 21612961 (-) True G2163923
TU2476609 other upstream 2394741 23541142 ~ 23546013 (-) True LOC110509827
TU2477392 other upstream 3137149 24283550 ~ 24286383 (-) True LOC110509849
TU2477515 other upstream 3254448 24400849 ~ 24407043 (-) False LOC110509347

Expression Profile