RNA id: XM_036968259.1


Basic Information

Item Value
RNA id XM_036968259.1
length 4963
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110509811
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21160126 ~ 21389662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGCGTGCTGCAGTGAAACTGTAGAGCTGAATACACACTGCTGTTTAATTTCATTCTTTCCTCCACACTGTCCATCTTTCTTGATTTCTGTGGAGAAGAGTGactattccctctctctcacctgcctCTGCTCTCTCACATTGTTGCTGGTGGACTATAGAGGAGTTATGCCTTTGAGTGCCTGCCCCCTGAGCAGCTTGGAGTAGAGGCTGCGTTGTCAAACCATGGTGCTGCCCCCGAGACCACAAGACCTGAGAATATGCAATGCTTAACGGTGACCATCCTTCGAGGAAAAGATGGCTATGGCTTCACCATCTGCTCTGACTCCCCAGTGAGGGTTCAGGCTGTCGATTCAGGTGGTCCGGCGGATCAGGCAGGTCTGCAGCAGCTGGACACTGTGCTGCAGCTCAACGGTCAGCCTGTAGAACAGTGGAAATGTGTGGAGGTCGCCCACGCCATCAGAAACAGCTCCAATGAGATCAAGGTGGTGGTATGGCGCACTGGGCCGGCCGCCAAGCCCAGTTTCGAGGGCCTCATCCACCGGCCCTCCTACaagcccacctcctcctccaactaTGATGCCCCCTCGCCCCCCACCAGGCGGCGGGACAGGTCCAAGGACCGGCTAGACCGGGACATGTCCCCCCCGGCCGTGCCCCCCCTCCCCGCCCACCACAGGACCAGCCGCCGGGTGCTGGTCAACGGCTCTGAGGGGGCTGGCGGGGGAGGGTTAGGATGGGTAGGGGTAGGGGGGGCGTGGGGGGAGAGGGGGCGCGTAGGAAGGGGGGCAGAGGAGGTGGATGGTAAAGTCAGGAGCCAGACCCATAGCCAGAGCCACACAGCCACGCTGAAGGGGACTAGAGTGAAGGCGTCCAACGGGGATAACTACATCATCCTGGCCCCCATCAACCCAGGAAGCCAGGTATTGAGGCCTATCTACCAGGACAAGCATGGTACCTTGGCAGGGAGGATGTACCCGCACCAGGCCAGCGTGCCCCAGACTCAAGGGGGTGGCGGTGCTCCACCTGGGGGTGTAGGTCTAGCAGGCCGGACCACCTTCCTAAGACGCTCCACTAACGCCAAGACATCTAAACCATCCGATGCCAACCTCTTTGGCCAACCCCCACCCAGCTACCAGCAGGCCCAGAGCTCCTCCAACTTTGCTAACTACCAGAACTGTACTATAGTACGCTCCCATGTACCACACGGCAACCCGCACGGCAACTACGGCTACGTCAAAGCAGCGCCCAAGATCCTCATCTTCCCCATCtttgttcagCCTCTGGACCTGTGTAACCCCACACGGACTCTGGTGGTCTCTGAGGAGATGATCCTCCACGAGAGCAAGCACCTCTCCATTAAGgtgacaGTCTTCATCTATACAGACCTAATGCTTGTGACCAGAGAGGATGAACCAGGGAGATGTAATGTCCTACAGAACCCTCTATTCCTCAGACAACTACGGCTACAGGACGATCGTGCTGAAGAGCTGAAGTTCTATCTCATCCACATGACTGAGAAGTGTGACTGCTTGCTCAGTCTGGAAGCTTACTCGGCTGACCAGAAGCGACGTGTGTGTCAGTGTCTGAAGGACAACATTGAAAAGCAGCTCCAGCTCCAGAGGAGTGCGCCGTTCTCCCCTCCTGCTGACCAGATGCTTGAGCCCAAAGTGGACACCCCTCCATGTGAACTGGGAGTAGGCCTATCCCTGCCACGGGGCTCCGAAGAGGACCTCCTTTACCCCTACCCTTCTAGCCCCTCACTGCCCCTGACTCTGGGCAGCCCACAACCCTCTGAGCCCCTCACGCCCCTGGAGGAGGTCTGTACCCCGCTGGGTGACGAAGAGGAGCACAAGGTGCCCCCCACCCCGCCCCCATCCACCGAGGGAGAAGACTGCAAGAGCATGGAGGGCACCGAGCCCGAGAtctggagggatagagaggaggaggtggaggaggaggaggaggagaggaagggtgaggaggaaggagagatagaggagggtggGGAAAGAGAGGCAATTCCCTCAGCGACGGATGACGAGGTCCCGTCAGACCCCCCCGACACCAacgcccccccctcctcctcctcctcctccttcatcatTCCCGAACTCCGCCTAGACCGCTCCTTCAGCGCCGATGCTCTCTCCTCGCCCAACACCGACGAAGAGTACGACgaggatgatgaagatgatgaagaagaagatgatgatgatgattatgatgaagAAGATGACAGCGATGATGCCTACCCAGAGCGCCGCGACAGTAAGCGCCGCAGTATGGTGGAGGGTTCTGCCTGCGAGAAGCATGGCGGCCGGCTGAGCGTCCAGAACTCACTGCGGCGCCGCACGCATAGCGAGGGCAGTCTGCTACAGGACCCACGCTCTACCTGCTTCACCTCAGACAACACCATCAATTGCCTGGACGCGAGCCACGGACACAAGGGGGGCTGGTCGCTGCCCTCGCCCAAGACCCTGAAGAAGGAGCTGACCAAGAACGGAGGCTCCATGCACCAGCTCTGCATGCTTTTCTCTGGCAGGAAGCTCAGTGCCGGATCCCCATGCAGCTGTGAAGTTGGCCCCAAAGGGTCCAAGAAGAAGAAATCCAAGAACCTGGCCAAAGACATGAAGAACCGGCTTGCTTTCCTTAGGAGGAGGAATGAGTCTCCCGGAAGCAACCCACCCGGCAAATTCGACAAATCCTTGAAGTCGTCAGTAAAGCCCACCCCGGAGGAGGCACTCAAATGGGGGGAATCTCTGGACAAGCTGCTGGCCCACAAATATGGCCTGGCAGCGTTCAGAGCTTTCCTGCGCACAGAATTCAGCGAGGAGAATCTGGAATTCTGGTTGGCGTGCGAGGATTACAAGAAGATTAAGTCGCAATCCAAGATAGCGTCCAAAGCCAAGAAAGTCTTTGCTGAATACATTGCCATCCAGTCTTGTAAAGAGGTGAACTTGGACTCGTACACTCGAGAGCACACTAAGGACAACCTTCAGAATGTGACGCGTTCCTGCTTCGACCTGGCCCAGCGCAGGATATACGGCCTGATGGAGAAGGACTCGTACCCTCGTTTCCTCCGCTCAGAGCTCTACATGGACTTAGTCAACCAGAAGAAGGCCAGCACCACGTCCACCTCCTCATCGTCGTAAACACGCAGAGATCAAGATAGAAAGTGAGAGACGACGACgaaagagagaaggcagagacTTGAAAGCAGGGGGAGGTAGATTTTTTTCATGTTcgcctttttgttttgtttctgccTTCATCCTGTCCCGTCATGAGTTGGGTGTGAGAAAGACGGCGAACTAGGCCGTGGCACTGAGGGGGGTGTTGTGTACACAACGACGATGACAACAGGCTGATGGAGGGCGGATAGAGAGCCCAGTCAGGACAGCTGGTCACCGTCATGTGAGGGCTTGTCCAAGGGTTTCTCGGATCACTCTCATTGATCACTGTCTGTCGTTCATAATGACATATGTTAGTGTGTCCATATTTAAGTTATCTTCTGGATGTACTGGAGAAAGGGTTGAAACCTCTGCAGACATGAAGACAGTCCAGTACTGTGTTTTTTTTGACAccccctatcctcctcctcctcctttggaGCCTGTTGGTACGACACAGAGGTTTGTTTTGTCCTAGTTTTTCCATGTCTCAAAGCTTTCATGACCATTTTCAAATGGACTTGCGAGAAAAAGGAGAAATTGGGTTGCTGGATCAATGTCTGAATGAAAATACGTTTTTTGGAGCTTTTTTCTGTTGTCATGTTCTCCAATTCACGGCGTACACACCTCTTTCAAGCACAGTCGGCATCTGTTCTGTTCAGCACCCTCTCACAGGGTCCCACCTGGTCGCATTCATCTAAAGAATACGGtaaaagacacagagacagagagagagagagaaagatggagaaaaTACAAATATCAACAATGGAACGGACCAAAACTGCAGAAAAGCAGAAATGTGCCACTCACTCGAAAACAtattggggggaaaaaaaagacTTGTTGCCTGTCTCCAAAGACTGTCGAAAAAAATGAGCAATTCATTGTAGCTCCACCTGGACAGAACAAGACAGCATTCTCAGGACATTAAGGCACTTGACTATGAAGCTTCCAAGCTTGAATTTGTTTTTTTCATTTTCGTTTTTACACATACAATGTTttcttttttaaattgttttaggTTCAAACCTGCACTCCATAGGTATACTGAGCAATACTGTTGGGAGGATGCTCTTTTCATAGACATAAAAAGAAAAAAGTGCTTCACCTGTACAAAGGTTTGCCTATTTATTTAGATACCTTGCCGGATGCTTCACCCATTGCACTCAGCTAAAAGCGCTCCCTCCCCCTAACCATGAAATAGGTCCACCGCTGTCCTGACTTTAAGTGCAATATGTTATCGTTTATTTTCCTTTTTTGGGGGGATAAGTTTCAATTTTGATTGGAAAGACAATGGCTCGATCTCTGTATTATACACTTTATTTGTAAGAGTCATGTTGCAAGATTCAGCTATAAGGTTGATTTACAGTTTAAGTAAATAAACAAGAAGAGATACATGAATTAAACAAGTCATTCTAACTGTGTACCCTGGCAGCAGGCAGCTAGGGGTTAAGGATGTACATATAATTCTTTaagaaaacaaagaaaaaacaagAAAACAATAGGTTTCACTTGCGTCGAGCTGGAACCTGGCTGTATCTATGTAAATATGAGAGACTCAAAGCTATAAGATGACATGTATTGTTATTAAAAATGAGGAAGGTCCACCCTTTCCGGGTCATACAATGCTTGTCAGGAGTTTATGAAGTTTATGAAATGTATTTGATCATTTTCACTGTTTACAATTCAAACCCAACTCCTAAGATAGCAAGCAAAAAAGACAATAGAAATACATTTGGTGTCATTGCTGAAGATAAATAAAACAACCAACTGGTGAAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2472845 lncRNA upstream 15362 21182279 ~ 21182565 (+) True G2163107
TU2472842 lncRNA upstream 21629 21175947 ~ 21176298 (+) True G2163104
TU2472826 lncRNA upstream 38454 21159248 ~ 21159473 (+) True G2163093
TU2472824 lncRNA upstream 40513 21157195 ~ 21157414 (+) True G2163091
TU2472817 lncRNA upstream 49878 21147413 ~ 21148049 (+) True G2163084
TU2473420 lncRNA downstream 38767 21428429 ~ 21428632 (+) True G2163646
TU2473424 lncRNA downstream 40035 21429697 ~ 21430034 (+) True G2163650
TU2473431 lncRNA downstream 48521 21438183 ~ 21438502 (+) True G2163657
TU2473438 lncRNA downstream 55112 21444774 ~ 21445077 (+) True G2163664
TU2473575 lncRNA downstream 206433 21596095 ~ 21596411 (+) True G2163800
XM_021590926.2 mRNA upstream 60333 21133409 ~ 21137594 (+) True LOC100135840
XM_036967875.1 mRNA upstream 101752 21004255 ~ 21096175 (+) False dnm1a
XM_036967702.1 mRNA downstream 280866 21670528 ~ 21708957 (+) True LOC110509813
XM_036967895.1 mRNA downstream 359618 21749280 ~ 21875071 (+) False pappaa
XM_036967896.1 mRNA downstream 359618 21749280 ~ 21875071 (+) False pappaa
XM_036967897.1 mRNA downstream 359618 21749280 ~ 21875071 (+) False pappaa
XR_005040326.1 mRNA downstream 574011 21963673 ~ 21974980 (+) True LOC118945260
TU2471264 other upstream 1400153 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1445184 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 1581416 19610889 ~ 19616511 (+) True LOC110509766
TU2470204 other upstream 2060359 19136669 ~ 19137568 (+) True LOC110509753
TU2470148 other upstream 2129143 19066178 ~ 19068784 (+) True LOC118945267
TU2473579 other downstream 210756 21600418 ~ 21601052 (+) True G2163804
TU2475443 other downstream 1447409 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1736118 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 2125960 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 2395957 23785619 ~ 23791664 (+) True LOC110509837

Expression Profile