RNA id: XM_036967895.1


Basic Information

Item Value
RNA id XM_036967895.1
length 9571
RNA type mRNA
GC content 0.49
exon number 22
gene id pappaa
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 21749280 ~ 21875071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAGATAATGTTGTGCATTTCAACTTTTGAATATCAAAAAGCAAGTCAAGGAATGTTTGTTTTTTcttaaataaaataatgacaGGTCGGTTTATTATGACTTTTATTTAGAATGTAATATGTGGCATTTTGCATACTGTCTTACTTTACTTTTGGGATAAGAAAACTAAACGGTGTAACAAGCGTTTGGCGGACAACTGTGGGTTTCTGCGACTAAACTAACTCATACAATCCAAGGAGTGATGGGGGCATGATCAACCGGATCCCCTCTGATTGATTACTTATTAGTCATCCCTTTGGCTTAATGAGACCCATTGAAAAGGCACAGTAGAACACCTGCATGAATCAAACATTCCTGAATCTCTCCAGAAGAGTCTTACTTTTGCTTAAACGCGGGCAAGGAAAGGGGGTCGTGGCTTAACATTAGCCAATAAGGGGGATATTACAGTATCGCTTCATGGGTTTATTTAGACTGATTCTACGGTTTGACAAGCAGctgtaaagaaaaaaaaacagaaagagaaactCGGGAAGATTTTATAGAGGAGCATTGTGGACCTACGAATTTTATTCTTATCTAATTTATATCTATCAATTgctctttatatattttttatcactCCTTCTCCTGAAAATGAAACTTTGGACTTTTCCCTGGCTGCCTTGCCTGGTGATACTCATCTTATGTTTTGGATCAGAGTGCGGGACTGTCCGGAGAAAGGGGAGATCCAAAAGGGACTTGGTGCGTATCAGGGAGGCGAGAGCCACCTTCCCAGGGGCTTGTGCCACACGTCTGCCGCGGGGCAAACGCTCCTTGCCCGGCTTAGAACGACGGGTGCCTCGCCAGCATCGACGCTCCTCTCAGGCGGAGGAGAACTCTCCAAGTCGGGTGAAAGCTGTTTATTTTACCGGCAGAGGAGACCAACTTCGGCTTAAACCGGGCGTGGAGATACCGAGAGGGAATTTTACTCTGGAGATGTGGATCAAACCAGAGGGAGGTCAACGATCTCCTACGGTGATTGCAGgTCTGTACGATAAGTGTTTCTACGCCTCCAGCGACCGGGGTTGGCTGCTGGGCATCCGGGCGGTCAGCGAGCAGGGCAACCGTGACCCACGCTTCTTCTTCTCCCTAAAGACGGACCGTGCCCACAAGGTCACCTCCGTCCACTCCAACGCCCGCTACCTGCCCAACACCTGGGCCCACCTGGCAGTCACCTACGACGGCCTCTACATGAAGCTCTACGTCAACGGCGCCCAGGTGGGCGTCAGCCGTGAACAGTCGGGCAACGTCTTCAGCCATCTGACCAAGAAGTGCAAGGTGCTGATGGTGGGCGGGAACGCTCTGAACCATAACTACCGGGGGACTGTGGAGAGGGTAAGTCTGTGGAGGGAGGCCCGGGGACAGAGGCAGATAATCAGGGACATGCAGGGTCACGAAAATCCTCAAGATGCACCTCTGCTGGTGATCAGGGAGACCTTTGAACACCCTGCCCGGAAGTGGCTGACGGTGAAGGATGGGAGCTTCCCCCAGCCAGACGAGGGTTGCAGCAGGGTGGGGCAGGCTGGAGTAGGGGTAGGAGAAGGTGGAACTGGAGGGTCTCTGGACACTACCCTGGAACCCCCGCCCTGTGGTCAAACTGTCTGCGACAACGTGGAAGTGGTGACCAACTACAACCGCACCTGGACCTTCCGGAAGTCCAAGACGGTGCGTTACCGTGTGGTCAACGTGTGGGACGACGCTCGGCGCCGGCCCACCGTCACGCCTCGTCAGATCCACTTGCAGCACCAGCAACTCAACAACGCCTTCGCCGTCTACAACATCACCTGGGAGCTGAGCGTCCACAACGTCACCAACTCCTCGCTGCGCCACCGTCTGGTCCTGGCCAACTGTGACATCAGCAAAGTGGGTGACGAGGCGTGCGACCCAGAGTGCAACCACACGCTGACGGGTTTAGACGCGGGTGACTGTATTAGGCACCGTAGCCACTGCCCTCAGTCCAAGCAGGGCAACGGGGTGTGCGACCCCGAGTGTAATTGGGACAACTTCTTCTACGACAACGGAGACTGCTGTAACCCCAATGTGACGGATGTGACCAAGACCTGCTTCAACCGCTCCTCTCCACACAGAGCCTATTTGGATGTAAAGGAGCTGAAAGAGATCCTGAATCTGGATGGCTCCACTCACCTGAACGTCTTCTTTGCCAACTCGTCTGATGAAGACCTGGCTGGAGTCGCTACTTGGCCGTGGGACAAAGAAGCATTAACACATTTGgGTGGCATTGTTCTGAATCCCTCCTTCTACGGCACATTTGGTCACAACCACACCATGATCCATGAGATCGGCCACAGTCTCGGGCTGTACCACGTGTTCCGGGGGATCTCAGAGATTGAGTCCTGTAACGATGCATGTCTGGAGACTGAGCCCTCTTTGGAGACAGGAGATCTGTGTGAAGACACTAACCCCACGCCCAAGTACAAGCACTGCAGAGACCCTGAGCCTGGCAACGACACCTGTGGGCGTCGTCACTTCACAAACACACCGTACAACAACTACATGAGCTACGCAGATGACGACTGTACGAACTCTTTCACCTCCAATCAAGTTGCCCGGATGCACTGCTACCTGGACCTGATCTACCAGACGTGGCAGCCCGATCCCAAGCCACCCCCTGTGCCCATGGCACCCCAAGTGGTGGAGCAAGAGCATGCCGCCATTACCCTGGAGTGGTTCCCGCCTATTTCCGGCCACTTCTACGACAGAGAAGTGGGATCAGTGTGTGATAAATGCACAGAGGGCCGGGTACTGATGCAGTACGCATCCAACTCCTCGTCCCCCCGACCCTGCGCCCCCTCTGGACACTGGAGCCCCCGCGAGGCCGAAGGACCTCCAGACGTGGAGCAGGCATGTGATCCCAGCGTGCGTACCTGGAGCCCTAACGCCGGCATCGAGCAGTGGGTTGTGGGGCTGTCTGAGTGCCCCCTGCAGGGTTGCATGCTCCAGCTGGAGTTCCCCCACCCACTAGTACCCGACTCCCTCACCGTGTGGGTCACCTTCTTCAGCCCCGAGGAGATGGCCCTTCCCGCCATCCACAACATCCTGCTCCTGACCGTCAGTGGAAACAACCTCTCGTTGGGTCCTAGTAACGTGTTCTGTGATGCGCCGCTGACGCTGAAGCTGgacgtggaggaggaggtgtacgGCGTGCAGTTCTTCACCATGGAGCAGCATCTGGAGATTGATGCCACCCTACTGGCATCCAAGCCCGACTGCCCGCTGTGCCGCCACTGCAAGCCGCTCCGCCACCGACTGCTGCGTCAGCCGCCATTCTCCCATTCCCCCCATGGCGTGCTGTTGAACAACCCTGCCAGGCGATACACTGACAGggacgTGGTACCAGGCAGTGTGTACACCTACCAGGTCCAAACCATCTCCGCCCGCAGTGAAAGTGAACCGTCTCCACCCCTCACCCATCAACTTGGGGCACCATACTGCGGAGACGGACGCATCCAGAGggccCAGGGAGAGGAGTGTGATGATATGAACTCCATGAATGGAGACGGCTGCTCCAGCCAGTGTGAGAAGGAGCCCTTCTTCAACTGTGTCGagGAGCCCAGTATGTGTTACTTCTACGACGGTGACGGAGTGTGTGAGGACTTTGAGCGGGAGACCAGCGTGAGGGACTGTGGCCTGTACACCCCCAGTGGGTTCCTGGACCAATGGGCCACAACCGTACTGGTGTCCCACCAGGAGAGTCTCTACTGCCCAGCCGAGGTGGCCGCCGGCTACCCTGCCGTCACTAAAACATGCCAGTCCAAGGTATTTGACCTTTCTGACGGAGTGTCCCAGTACGCCTGGTTCCCCTGCAGAGAGGCCCTGCAGTCCTCCAGATACCCTCAGTACTGGCTCAAGGCCAACTTCTCCCACCCCATGGTGGCTGCTGCTGTGATAATCCACCTAGCTGCAGATGGTACGGGCTACATCGACCAGACGCAGTGCAACATCACTGTTAAACTGGTGGACACCAAGGAGGTCATCCACAGCTTAGGCGATTGGCGTCTGAGCTGCAGGACCAACCCCCTGGTAATCCCAGTGAGCCATGACCTGAGTGTGGCCTTCTACCACACCAAGTCCATCCTGGTCGAGTTCCGCTCCCACCTGGTAGCCATCTCTGGCGTGGGCCTGCGCTCCTTCCAGTTCTTTGACCCAATCACCATCAGCGGGTGCCAGAGCAACGAGATCTACAACCCCATGGgtcagagCTGTGTCCATTACTCGTGTGAGGCCATCGACTGCCAGGATCCGCTGATCCGCAATGCAGAGCTCAAGTGCAGCAGTCTGGGCTTCTTCAACGGAGCTCGCTGCACCATCACCTGCAACTCTGGCTACGTCCTGCAGGTCCACAGAGACGATGACATCATCAAGACTCAGTCGGACTCAACAGTGACCATCACCTGTGCAGATGGAAAGTGGAATAAGCAGGTGTCGTGTGAGCCAGTAGACTGTGGCCTACCAGACAAGTACCACGTCCACCCAGCCCACTTTAACTTCCCTGAGGGAACTACTTATGGCAAGAGGAGTACCTTCCAGTGCAGGGAGCCTGCCCAGCTTGTAGgtTCTAACAACACCCTGACGTGTCTGGAGGATGGCCTGTGGTCGTTCCCCGAGGCGCTGTGTGAGCTGCGCTGTCCAGCATCGCCCCATGTGCCCAACGCCATGCTGCAGACCAAGCGCTGCAACGACACAGGCCTCAAAGTGGGCTCCCTCTGCAAGTACAAGTGCAAGCCGGGCTACCACGTCACCAACAAGCCCAAAAGGCGAGCATTTAAGCGTCAGTGCACGGAGGACGGCAGCTGGCTGGAGGGGGCGTGCGAACCGGTGACCTGTGACCCTCCGCCCGCCATCTTCCACGGCATGTACCAGTGCACCGACGGCTTCCGCTTCGACAGCACCTGCTGGATCAACTGCCCCAGAGCCAACCACACGGTGAGACCGCTGCACGCCGCTCCATGCAAgcagGGGCCCAGCACCAATGTGATCCGTTGTAGGAAGGACGGCAACTGGACTGGTTCCTTCAAGCTCTGTCCTCAGAGCAAGGGACAGTGCTCTCTACCTCAAAACCTTAACCCTAGCATACGAGTCAGCTGCAAGAAGGGACATGGAATAGgtgaggagTGTGAGCTGACGTGCAGGGACAATAACAGCGACGTGGTGATCCTGCTTAGCAACATGACCGCAGACAGCATGCGCAAGGAGCACTGGAGAAACCCACCCaaagtcaagAATATAGTGTGTACAATGGGACTGAAGTGGTATCCACACCCAGAGGTGCTCCACTGCATCAAAAGATGTGATCCGTTCATTGGAGACAATTACTGTGACTCGGTCAACAACAGAGCCTTCTGTAACTACGACGGAGGGGACTGCTGCCACTCCACCGTCAAGACCAAGAAGGTAATCCCGTTCCCCATGTCCTGTGACATACGGGAAGACTGTGCCTGCCGGGACCCCAAAGCTGCAGAGAACAGGAAAGATGAGCACGTCCACTCCCTggggtgacccccccccccccccctcaccccaaCCCAAAACCACCCACACCTGGACTGGGACCGAAGGCGACCCGctgtccccttcctccccctaACCTCCTCCACATGCTGCTTTACAGGAGTAGCTCTCCACCCATACTGCACCCCCCTAACAGACACCTGCCTCCGACTTCTCCACATTGGGAAAGATGAACAGACCAGACTAGATAGGCTAAGGGAAAACCCATTTCTTAAAGAAAGGAAAGAATCTGCAAAGTCACAAACCACCAAAACATCTACAgcaagagaaaaaaagaaaacacaaaTACAAACATTTTTTGGAATgaacaatatatataaaaaatgaccCCAAAACAAACCCAGACTGGATAGCATGCCTTTTGTTTAGTTTGGTGCCAGCTTCCGTGTTCATTTAAAACTGTACAATCTCATATGATTCTctttcagcccccccccccctaaaagaTACGTTATCCATATCATATGGAATCTTTGTtttgggggcgggggggggggggggggggggggggtgtatgctGAAGTCATCAATGGTGGCACTGAATGACAGACAGAAGGACTATTGCCAAAATAACAGATAGTATGAACACATTTGACGTGCCCTCATGTTGTATTGCTCCAGAGCTGGTGAGAGTGCCATTCCTGGAGATATCACAGCACAGGGTTCAGGCTGTCAgttccctctgtcttctctcgaTGGAAATGCGTTTTATTTTTCTTCATATATCACAGGCTTAGAAGCTCTGCTCTTACACAGATGTGAAATAGGAAAAATAAAGAGTTGGTGGGGATGTAGGCGACCATATTGATAAAGAGATTCAAACCAGAGAAGTCTAACATATtacaggaagtgacatcacaTGCAATGAAGACATATtgcaatgcaaaaaaaaaaaaactgttattatggctgctcctgctgctactactttTGCTGCTACTTTGCCATATGACCAACTGCATACTATTACTAcccagtgaggttggatggagtcCCGTCTGCCGTACCGCATACCTCCTAACACCATGCATTAGTGGGCACTTGTATCTGCATGTACAGTACACTCAACTCAAACCGAGAATAAACACTCCTGCAACATTGGAAATGGgtagtggagaaaaaaaaacagttgcAATAGCCTCATAATGTTGATGTCTAACCTCAGAAAACATAACACCTCACATTTCCATTTCTATACCTTTTTGGTTTATCCAGTCCAATAGGCTATTTGTCAATCAGAGAATATACCAGAAATGTCTCACCAAAAGCAATGTTGACTCAATACAAAAATGCAATACTTAATGATGAATTGAAAACGACTTCAAGAATGTGATTGACACTTGAAAACACAGAACCTGGTGAATAGTAGTCAGTGTTCATTCACAACTACATCCTCCAACGGTTTCCAGCGGCCTTGACTTCAATAGGCTTAGTTcaacagtacatacacatacaaacaacaTGGAGGCTTTCCTCATATTAGTATAGACATCTGGATGTATTCGTTGTCAACAAGTAGCATTTagaacagcagtagtagtagtacagtttATGCTTAAGACACTATTGTCTTGGCTTCTCTTGAGCCCAATGGCTTGACAGACTGCATGTGTTTAGTAGCCCAGCTTGGCCTTTTCTTACCTGCATTAGTGCTGGAGGTGCCATCCCTGGCACTAGTAGTGTGACTTTTGTACCTATCCCCCCATTAACCACACAACCTTTACTTCAAATAGACTCACCTTTCATAGCCCATAAACAAAATGTGCaaatacagatacacacacacctgtataacTGAGTCCTCCTCATCAGCATATTGTCATGAAGGCTGCTTGGCTTAAGGTCCACAGGCTGCTGCTCCATGTTTCAGCCATCCCTGGGCTATCTGGTCATAAATGTATACAACCCTGTGTATTCCTCTTAGGCTGcgttcacacaggcagcccaattctgatatttttttcattaattgaccaatcacatcaggtcttttcacatcagctctgaaaaagactAATTAGTGaagaaaatatcagaattgggctgcctgtctaaacgcagccttagGGCTGTTTTCAGTCCATGTCTCGGAAGTTCAGCGTCACAGCTTGATTGAAATTTAAAGCCATTTGTTCTCGcgttagcggagactgcattcactgtaaacgctgCATATATCGACTCAATCGGAAATAACCTTTACATTTTTCTAGCGCACAATCTGTAACGCTTAGAGCccttgaatagagccctaaacgCTCTCATCCGGTATGGACCAATGGGATGGTCCCTTTGACTCCTCAACATAGGCTGCTATAAGGCATTCCAGAATATTCCCATACACCTTTCAGTTCTGACCAATCACTGATCATCATAGatacagacagagtagagagatagTAGGACAATACCACGTCACACAGTAAAGTAGGGAGACATTTCAACGTCAAATGTACAATGTAAATATGACATTTTCAGTGTAATACTGCTTTTTACGCCCGTAGAGGTGAAAAAAGACAACCTTACAATTGTTCTCCTGTTAAATTTTCTCATTTATGTTAAATTTTTACAAAATGTCGTAATATTTcatcagtatttgtattatttaccTCAGTATCTGCACTTTTAGGTTGCCTTTTAAGAAGAAAAATATATGTCAACACGTTTAGAAGCTGCTATTGTCAGAAAGGTGATTTGAAAAAGTGTATGATGTTTTTGTCATTTGACACTCCTATGCTATTACTATTAGCTTTCCTGTGATTAGCATCGTTGTATTCCCACCCGTATCCATTATCATATGATTACGATATTATTGTATCAAGGCTATATAACCTGGGACTTGcgccattttttaaaatgtaggtTCAAATATAAAAAAGTCAGATGTACACGTTATGAAATATTCTACATGATATGAAAGCATTAATGTATTTTGTGTTCCTCCTGGTTAGGAGACAAACTTTACATTTTTTTCTCCATGGTTTTTGTAATGCACCATCTTATGTATTTGATGCAAATTGTGGCGTGGAAACCATGGAACCATGGAGAACGGATAACTAAATGAAGAAACTACCCCAAAAAAAAGGGACTCTAGAAAGTTCCAGAATTGAAAGACTTTAATAACCTGAGTGAAGGAACTGTGGAGACTACATTCATTGTTATATAGCCTACATCAGCTTCGACAATTGTGCATTTAACACTTTATACAATATATATCCCTGGTAAATTGAACTGTGTTATGTTGATATAATCAAATGGTATGAAATAATACTCCAAATACTGCTGCTTTCATTAGAGATATTACTAGTAGGGAGAGCACTACACAAAGCCAACAACCGTACTGTGGATTATCATCATCTGCCAACACTCTCACAGGATTTCTAAAAAGACTAACCCAAGGGTTATCTTGCCATTGGACCCTCCCTTCCCTCAAACTGGACAAACATTATAGATCTGTcatctctttcacccccccccccccccttctttcaCTTAACTACAGCTCCTGTCTTCGACACTGTCTTGTGTCGTCATCCTCATCAATGTCATTACACAGTCCGGAGACCAGAAACAGTGACTCTCCGAGAAAGGGATATGACAGTCTTTACAGAATGTGACTGCTTCTGTGTCAACATGTACACAGCCCATGATGTGTGGTCTGGCTTTAGTCTTCTGATGTGTTCTCTGTACTGGGCAAGGTACTGTTCCAAAGCCATAAAGCCAGGATGTTATGAAATGAAGTTTCAGATGTGATGTTTTGTATACGAGAACATCACCTCTCTACTGTAAGCCACCACAGCATACCTTCGCTGTACCTCATGCCTGTAATGTTTGCTGCTTCTATATGTTGGTATTTAGTGATTTTTGCGTCTCTTAGCAATGGTGTAAATAGTAGAACTATTTATTGAGAGTGTTATACTTTTTTAAGTTATATTTAATGTTCAtgtaaattattttttacattgctcTTATAAACAGACATATTGGTTGTGAgttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2473871 lncRNA upstream 1109 21747720 ~ 21748171 (+) True G2164087
TU2473754 lncRNA upstream 34275 21713203 ~ 21715005 (+) True G2163972
TU2473725 lncRNA upstream 116500 21632551 ~ 21632780 (+) True G2163944
TU2473592 lncRNA upstream 131182 21617831 ~ 21618098 (+) True G2163817
TU2473580 lncRNA upstream 147015 21601714 ~ 21602265 (+) True G2163805
TU2474811 lncRNA downstream 553689 22428760 ~ 22429060 (+) True G2165009
TU2474827 lncRNA downstream 563386 22438457 ~ 22438695 (+) True G2165024
TU2474971 lncRNA downstream 650621 22525692 ~ 22525979 (+) True G2165167
TU2474981 lncRNA downstream 655346 22530417 ~ 22530648 (+) True G2165177
TU2475005 lncRNA downstream 669811 22544882 ~ 22545087 (+) True G2165200
XM_036967702.1 mRNA upstream 40323 21670528 ~ 21708957 (+) True LOC110509813
XM_036968258.1 mRNA upstream 359618 21215956 ~ 21389662 (+) False LOC110509811
XR_005040326.1 mRNA downstream 88602 21963673 ~ 21974980 (+) True LOC118945260
XM_021590939.2 mRNA downstream 110694 21985765 ~ 21990241 (+) True trim32
XM_021590949.2 mRNA downstream 1436565 23311636 ~ 23325364 (+) False LOC110509823
XM_036968171.1 mRNA downstream 1442686 23317757 ~ 23325364 (+) False LOC110509823
XM_036968169.1 mRNA downstream 1442690 23317761 ~ 23325364 (+) True LOC110509823
TU2473579 other upstream 148228 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 528099 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 1951506 19795260 ~ 19797774 (+) True G2161678
TU2471217 other upstream 1996537 19741814 ~ 19752743 (+) True G2161635
TU2471142 other upstream 2132769 19610889 ~ 19616511 (+) True LOC110509766
TU2475443 other downstream 962000 22837071 ~ 22841481 (+) True G2165628
TU2475799 other downstream 1250709 23125780 ~ 23134290 (+) True G2165973
TU2476233 other downstream 1640551 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 1910548 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 2625337 24500408 ~ 24532154 (+) True LOC110509859

Expression Profile