RNA id: XM_021590946.2


Basic Information

Item Value
RNA id XM_021590946.2
length 6557
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110509822
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23193002 ~ 23260394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATTGGTTCTGCTGAGACGCTGGTGTCACACTGTCGTCACACGCTGTTACCCAGGATCCTCGCTCCAAGACACTTCCTCTTCTCTCAGTGTGGCTCAGCAGAAATAGATTACAGCACTCAGTCACTCAGTGCTGGTTGAGAGATGAACCATAAAATACTACCTAGGCAGGACAACACTATACAGTCATTTACTGACTCGCCTCTTAACCTACCTCTTACAGTGCTTCTGAATTTTACTTTTGTGGATATCCATAGACATCTGCGGTGTTGAAAGGAGTAACTTTGTGCTTTGTTAGGAGTTTATGGCTTCACATTTGAAGGTTTTTTGGGATCCTTGTCATTGTTCGGATCGCTTCAGAGGTTCATCATTAGTTATTGGGCAGCATTTGAGGACACCTGAGGAACAAATGTTATCCTTTGCTTTAAAGCGTGCAAAGTATCTCCAATGGGTTTCTGTCCCAGTGGTCTGGCAGCACTGTTGCTGACATTGACGTATTCGACTACTGGAATAATCAATTGAATCTGACGTGGCTGTTGGACATCTGCTTGCATATTGACTTATCGGGAACACAGAAAGCCATCTCAAACCTTTTTGTGTGTGTCCTGGTTGGAGCAGAGTATTGCTATGTTTTTCTCCTGGATTCTCTAGCAGAACTCTAGGGTAGTACATTAGCATATGTGACATTTTGCATTCACGTTCTCCTCCACCCTAAAGTTTAACCTCACGACACATATCCCTTAGGCTAAGGAGGGCCTTTCAGTGCCTTAAGTTGACCTGGTACCCCATGTCGTCTGACTCTGGCCATCTCACCGGGGCCCAGAGAGCTGTGTGCAGGCTGGTCCACCGGGGCCCCAGACCGCAGGCCCTGCTGAGGCCCATAAGGCTGGAGCTGGGGGTGTATGTGGAGAAGACCTGCACTAAACAGAAACACAGgatgGAGGCTTCGTGTCTGGAGTTGgcactggagggagagaggctgtGTAAGGCGGGGGACTTTAAAGGCGGGACAGCGTTTTTCGAGGCGTCTGTGCAGGTGGGAACAGAAGACCTGAAGACCCTCAGTGCCATCTACAGCCAGCTGGGCAATGCCTACTTCTACCTGAAGGAATACGGCAAGGCCCTGGAGTACCATAGACATGACCTCACTCTGGCCAGgacaaTAGGGGACAGGATAGGGGAAGGGAAAGCCAGCGGTAACCTTGGAAACACGCTGAAGGTTTTGGGCCGCTTCGACGAGGCAGCAGTGTGCTGTCAGAGACACCTGGACATCTCTCAAGAGCAAGGGGACAAGGTGGGAGAGGCCAGGGCTCTGTATAATATAGGGAACGTGTTCCATGCCAAGGGAAAGCAGCAGTTATGGGGCTGTACCCAGGACCCTGGGGACCTCCCACCAGACGTCAGAGATACACTGCAAAGGGCTACTGGCTTCTACGAGTTGAACCTGTGTCTGGTCAAAGAGCTGGGGGACAGAGCCGCTCAGGGGAGAGCCTTCGGTAACCTAGGCAACACCCACTACTTGTTGGGAAATTTTGTGGAGGCCATCAAATTCcacagacagAGACTTTCCATTGCCAAGGAGTTCGGTGACAAAGCAGCAGAACGTAGAGCCTATAGTAACCTTGGCAATGCTCTGATTTTCCTGGGCCAGTTCAACACTGCCACGGAGTACTACAGGAAAACTCTGCAGCTGTCTCGTCAGTTAAAGGACCAGGTGATGGAGGCCCAGGCGTGTTACAGCCTGGGGAACACCTACACTTTGCTGCAGCAGTATGAGAGAGCCATAGACTACCATCTCAAACACCTCCTCATAGCCCAGGAGCTCactgacaggGTTGGAGAGGGCCGTGCCTGCTGGAGTCTGGGAAATGCCTATGTGTCTTTAGGGAATCATCGCCAGGCCCTGCACTATGCCCGCAAACACCTGGATATCTCCAGAGAGattGGGGACAGGAATGGCGAGTTGACTGCCAGGATGAATGTGGAGCAGCTGATGGAGGCTCTGGGGGTCAACGAGAGTGACCTTTCACCCTGCGGATCAGAGTTTGAGGTGCAAGGAGCCAGACCCAAAATTACCAAGAGAAACAGTATGGACAGTGTCGAACTGTGGAAGTACTCGTCAGATAAGAATGGAGACAGCCAGGAATTGGACAGTATATCTCGGAGATCCAAGAGTCAGCAGTCTCAGCCAAGTAGAGGGAAGGGCTACCCCGACAGCCAGTCCTCAGAAGAGAGGCAGTGGTTTGACTCCCCTGTGGACGCCGATGAAATCACAGTCCAAGCCCCGCCTCCGaaGCTAAGTCGTGACCCCTCTGACGAGGACTGCTTCTTCGACCTCCTCAGCAAGTTTCAGAGCAGCCGCATGGACGACCAGCGCTGCCACCTTGACGACCCGAATGTAGAGAACGGAGAAAACGGCGAGAATGGAGGGGCTGTCTCTCTTAATGAAATGCTAGATCCAGCGCTCATCACCTCGCCCCAGACAGAGGAGCTGTTTGACCTGATCGTCAGCTCCCAGAGCCGTCGCCTGGATGACCAGCGGGTCAGCGTCAGCAACCTGCCCGGCCTCAGGATCACCCATAACAATCTGGGCCACCTGTGTGTTGACACAGACCCCCAGGAGCCCAGCGATGACTTCTTCAACATGCTTATCAAGTGCCAATCCTCCAGGATTGATGACCAGCGGTGCTCCCCACCAGAAGGGGGCCCCCGGGCTCCCACGGTGCCTGACGAGGACTTCTTCAGTCTGATCCAGAGAGCACAGGCCAAGCGCATGGATGAGCAGCGGGTCCACCTCCCCTCAGAAGAACAGGACGGGCCCGACTCCGACCCATCCGGGGACTCCAGCTAGGAGCCCAAGCAATCAGCCCTGGGGGCAGGGTTTGAGACTGCGACCATTTGACTTGGCAATGCAAAACCAATCTTTAATTGGTCGCTAGGGTGTCAgtgaaaatgttttgcttgtcatcTTAGTTTTTGGTTCACAATTTGCTTTTTTTCTATTATCAAGATTTATTCTAATAGCAGTGGGCAgcaacaatgggtatgcaaaccaggtattCAAAAGTTTAGTCTGGAGTCTTGGTTGAATCTTTGCGATGTGCAATTCGGTCATCATCCACTGTTTGAATGAACGTGTCTAAAGGTTTTCCTAAAACACCTTTCCAATTAAATGTTGACTGGAAAGTAGGACTATCTGACAgaatgtggggtggcaggtagcctagtggttagagtgttggactagtaaccgaaaggttgcaagatcaaatccccaaggtaaaaatctggtgttctgcccctgaacaaggcagttaacccactgttcctaggccatcaacttgcctagtaaaaaaataaataaaatgatatCATAATGATTTGTATCAATCGCAGAGCATTTTTCTGCTAACTCTGTCAGTGTAGCCCACACTGTACATTGCACAGTACAAGAACACTGCTAGGCAACTTAATTCTctaattatacttttttttattgttCCCAGACCTTAaatgtggtctcctgatgtggtttaagcattgttgtggacttaaaaCATCCAAGTTGTTGTAGTTTTCCTATTAAAAACAAAGTGTGATTTTGACAGTGAAAACCTGGAAAAAAACAAGGAAAACTATTAAATTAAACCGGGAAAAATGAATTTACCAAAACTGATTTTATAGGGCTCTACACCTGTAGACTGACTGTTCAAAATCACTaacactaaccaggtttccatccaacctttttatgtgagtaaagtacatgtcggatgAGACATTTCATGACAGGCCAGATGTAAACAGCTAATATATCGGTAACCTTTCCAAATAttgacaaaacacaacacaacaaggtGTGATCCTTTTTTGTCTGTAaaattatgtgagaaatggcggtggaaacgcctttatgcacaaatattgatcatcatatcaaagtaaacttggagtcacgtggtgttgtatgttgtatgttatgttatatgttgTGGGTTCCTCCCACTGCGacttgggaaaccatgcagtttattaggctacagatgaaatagcTTATGGgctggtgaaagtgcacagtaatgagcttgatgctcctatacaatacatatcgagggtgttattctggtgacatgatgcttggctgccatttgaaTAATAATCTGCCATTTGtctataataatctcatcatgtaggctatacccgcactgtttctgcaagctgttggctagagggCACGAGCCAAGACCAGAGTGTGCACATTCACTATATAACTCAAAAACAAAATGTCACAGAACCATCAGTAGACTTGAagatgcgatggaaacccatttttttATTTGGTAACCTCAAAAATGATGTGTATGGGCCGcacacagccttttatccacatcaagtcaatttgatggaaactcatctctggtgggaaaagtTTTGagtattcgcatgaaaatctgtcgctaattggatggaaacctagctattaaCACAATGTTTGAGATTTTGCAAAGGTTTTATTTTCCCCTCCAAACAATCAATGTTAATATGATGTTGTCAAGTTAAAATTTAATTATTTATGTATGGAGGGTAGGACATTATAAGCTACTTGCTCAGCGTGCATTATTGCTCAGCGTGCATCATCCGCTTTACCAGGACAGTATTCTTTTCATTGGAGCCAGTAGCTCCCAGTTGGCACTGGCCCGGTGTGTCACTGGCAAATTTACCTGAATGTCAAGCCCTGCCCAAGGCATGCTAATTTACCAGATGGCTTTTCATTACTTgcctggttctgtatggaatgCAGCTACATTATAAGTCACAGGTGAGGTCATTATCATGGGGTGTGACCAAATCATGTACTGGTGCCATCAACTGGTCTGCAACCCTGCCTGGGCCACCACTCGAGGAGATCCTTGAAGGGAATTAAGTAAATTAGGGTGATGTGTGACGCAAGATCCGAACACCATGTGCAATAGGTGGCACCCTTTCAGCCGTTGTGAATCTGTTTTAGTTTTGAAAGGTGTACAAATCCAAATTCTAGGAGAAATCTATGTGAATGAAGTGTTTCGCTAGGGTTTGAGACGCCAACAAGATATTTACTGTACCCCATCTACTGCCTTaaatcagtttttttttgttCAAACTCCGATTGTATTACTAAGTATCAGGGGTCTGATTTCAAAGCGTATAATGGAGAAGTGTTTGGTTTGAAGGATGACGATGATTGCTGCTGGTATTTTTGGTGACAAACAGTATTAGCTATAGTTTTCAGTGTCAAAATTGCATTCGGTGTTAGACAACAGCTCAAGAGACTACAGGAATAATTATAAAACAGCACGGTTAGTCAAGGTCTAGTCATTATAGAGTTCATGTCTTCTGGAGtacaaacaggttttaaacaaAAAATTATACATTTCTCAAAATAAATGTTATGTTTAATAGTATACAAAATGTCAAGAACATATTGTTTTAGAGAGTTGAATCAAGCTCAAATCAAAGTGTATCCCTTCAGTTAGGCCATGGAAGTGCCAATAGTGCAGTATATAGGCAGTATACTGATTGCAATCGACAAATGTCTAATGGTAACCCCCACAATGCCATCAACCTATCTCTGACCAATGACCTTACACCCCATGACAGTCCAATGGATCGGGGACTTTTTTTTAGGACGACACAGGAGTATATGTATAGCCTATGCACACACAATCCTGTGTTGCAGGGATCTCCAAATACATTGCCACAGCTGTTAGTTTTCATTTTCCAATTGTCTACGAGGGGTTAGTTTTATATTCTGCTTGTATACTGTCCCTTTGTGGTGAAACATGTGTACTACAGCTGTCCTGTGTGTCCTATTGGAAATGAGACTTGTCATTCCTGAGGTTGAGGATGTAATCATGTGAGCAAGTATAATGCTTTTAAGCCccttttattatttcagtgacaAGCTATACAtaactgtacagtatatactttgCATATTTTTTTGCAGATCATTTTGTAAAGGAtggaatatatttgcaaaaaatgtTAGTGCCTTTTGTATTTCTGTTCTCTTGTGGCTATCAGAATTATCCTGTAGCAGACCCAGTGGACCAGAGACAGGTGTATACTGAGGAAATGAAACAAAAACAGCTTGTAGTAAGATCTAAACGTACAGTAACGTGTTGCCTAACTGATGATccataatggacatttttgtcgCTCTTCCTCTTTGGGACTCCATTTGTAAATGTTAGTTTTACCGTGTAGCTCTACTTTGTACCTCAAGAGTCATGACCCTATCCCAGAGTGGGCCATAAACCTAACTCGGGATGGGTCGTGATCTATATGATTCATCTCGATCTCTGTAAAAAGAGGCTTACAAGGTCCCCACTGTTTTCCAAACAGAGCTAATTTCCTCTATTTTTCCATAACTTATAAGGGTAAACTTGGTCCAGATCTATCCGGTACGCTTCTATTTGTCACTACCatatgtacatatattttttttgtatttatgttCCATTTGAGGACATAAAGATGTCCCGTCTGCTTTTAATAAAATATTGATTCCAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2475987 lncRNA downstream 67397 23123142 ~ 23125605 (-) True G2166141
TU2475984 lncRNA downstream 148945 23043842 ~ 23044057 (-) True G2166138
TU2475751 lncRNA downstream 158193 23034586 ~ 23034809 (-) True G2165927
TU2475399 lncRNA downstream 383070 22809644 ~ 22809932 (-) True G2165584
TU2475363 lncRNA downstream 407477 22785271 ~ 22785525 (-) True G2165548
TU2476182 lncRNA upstream 119182 23362483 ~ 23362996 (-) True G2166329
TU2476472 lncRNA upstream 123558 23366859 ~ 23367138 (-) True G2166599
TU2476474 lncRNA upstream 125794 23369095 ~ 23369404 (-) True G2166601
TU2476493 lncRNA upstream 156875 23400176 ~ 23465613 (-) True G2166619
TU2476561 lncRNA upstream 244838 23488139 ~ 23488508 (-) True G2166682
XM_036967202.1 mRNA downstream 1033 23181355 ~ 23191969 (-) True LOC110509821
XM_021590942.2 mRNA downstream 23364 23126610 ~ 23169638 (-) False LOC110509820
XM_021590943.2 mRNA downstream 23364 23126610 ~ 23169638 (-) True LOC110509820
XM_021590941.2 mRNA downstream 235234 22837054 ~ 22957768 (-) True LOC110509819
XM_036968207.1 mRNA downstream 598346 22593601 ~ 22594656 (-) True LOC110509818
XM_021590957.2 mRNA upstream 297582 23540883 ~ 23552798 (-) False LOC110509827
XM_036967796.1 mRNA upstream 426478 23669779 ~ 23687330 (-) False LOC110509832
XM_036967795.1 mRNA upstream 426478 23669779 ~ 23699884 (-) False LOC110509832
XM_021590967.2 mRNA upstream 504788 23748089 ~ 23756826 (-) False LOC110509834
XM_021590969.2 mRNA upstream 504788 23748089 ~ 23756826 (-) True LOC110509834
TU2473704 other downstream 1580041 21612563 ~ 21612961 (-) True G2163923
TU2473694 other downstream 1595507 21596551 ~ 21597495 (-) True G2163913
TU2473141 other downstream 2046665 21145149 ~ 21146337 (-) True rabepk
TU2473122 other downstream 2216054 20970332 ~ 20976948 (-) True surf4
TU2472112 other downstream 2862864 20329748 ~ 20330138 (-) True G2162422
TU2476609 other upstream 297841 23541142 ~ 23546013 (-) True LOC110509827
TU2477392 other upstream 1040249 24283550 ~ 24286383 (-) True LOC110509849
TU2477515 other upstream 1157548 24400849 ~ 24407043 (-) False LOC110509347
TU2477885 other upstream 1286889 24530190 ~ 24533150 (-) True LOC110509858
TU2478009 other upstream 1603852 24847153 ~ 24869810 (-) True G2167965

Expression Profile