RNA id: XM_036968169.1


Basic Information

Item Value
RNA id XM_036968169.1
length 2341
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110509823
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23311636 ~ 23325364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCTGTGAAGCGGGCCTGCTTCTACGTGATTTGGAAACCGGATGTAAAGTAAAACCTCATGAGCAGCCTTTGGGCCAGCGTTGATTGGGCGGCTGAGCATACAGAAGGGGATTTGACCAGTGTCGCTGCAGAgggcttgttttttttctttcctttttattATCCCCAGTTATTCTTTAGTGGGAACAAATGGACCAGTGTTTTAAAGAGAGGGACCCATGCGCCTGTTGTAACCTCAAACAGAGGGATAGGAATAGAATAGCCCATGGTCGCAAGAACTAGAAGGGAAAccgggagagatagagagagaggattagagagagagagttttccgGGATCCACTGTCGTTTCTGGTCTGGACTTGGATCAGCGGGTTACCATGCAAAagATTCCTGTATGCGCGGGCTGTAATCAACACATCGTGGACCGCTTCATCCTCAAAGTGCTGGACCGCCATTGGCACAGCAAGTGCCTGAAATGCAGCGACTGCCAATCCCAACTAGCGGACAAGTGCTTCAGCCGGGAAGATAGAGTCTACTGCAAAGAAGACTTTTTTAAGAGATTTGGGACCAAATGTGCCGCGTGTCAGCAAGGTATTCCGCCGACGCAAGTGGTGAGGAGAGCGCAGGATTTCGTGTACCACCTGCACTGCTTCGCGTGCATCGTGTGCAAAAGGCAGCTCGCGACAGGTGACGAGTACTACTTGATGGAGGACAGCAGACTCGTGTGCAAGGCTGACTACGAAACCGCCaaacagagagAGGCAGACTCAACAGCGAAAAGGCCACGAACGACTATCACCGCCAAACAGCTCGAGACCCTGAAAAACGCTTACAACAACTCTCCAAAACCTGCCCGCCACGTACGAGAACAGCTATCGTCAGAAACTGACCTAGATATGCGAGTTGTTCAGGTGTGGTTTCAGAACAGGCGAGCAAAAGAGAAGAGGCTGAAGAAGGATGCAGGCAGACAGAGGTGGGGACAGTACTTCCGCAACATGAAGAGGTCGCGAGGCAGTTCAAAATCAGACAAGGACAGCATCCAGGAGGAGGGCATGGACAGCGACGCTGAGGTTTCCTTTACAGATGAGCCACCCATGTCTGAGCTCAGCCACTCCAACGGCATCTACAGTGGCCTGAGCGAGTCGTCCCTGGCCATGGGGTGCCGCCAGGAGAGCAGCCACGGCCCCTTCCCCCTAGAGCATGGAGTCCTCCAGTCCCAGGACCAGTACCACAACATCCGCTCCAGCAGCCCTTACGGCCTACCCCAGTCCCCAGGCTCGCTTCAGTCCCTGCCCAGGCACCAGCCCCCCATCTCCAGCCTGGTCTACCCTGACTCTGGCCTGTCCATCATGACCCAAGGCGGGGCCCCCGGGCTGAACCCAGGCATGAGAGGAGTGTTGGGTGGCGCTAACGGCCCCAGCTCCGATCTGTCTACTGGCAGCAGTGGGGGCTACCCAGACTTCCCAGCGAGCCCAGCTTCCTGGTTGGATGAAGTGGACCACGGCCAGTTTTGATTAGCTGGGTTGATTGGTCAACGTGGTCTAAGGACTCAAAGGTGTGTGTCACAAACTGGAAAGAGACAGTCACACATGACCTGTGAAACAGAGAGACCGGGTCAGACGGTTGCTGTCTTCCACCCTTCTTGGATCACTCCATCTGTCTCTATCAATTAACTGTCAATCTTTTTCATTTCTCCTCATCTGAGTGGACTGGAAGGAATGATTGGGCCATCAAAAAGTATGAATGGCAGCACTTGGAACTCACACACTCCATTCCTCATAGAGAACCAGACTGAGATTCATGGCGTGCTGGCCTGTTATGAATGCTATCTTTGTGACAACATAACAAATTTCAACTTTTGCCCAATTGGATTGTGATAGACTCTACCCCCAATCCTTTCCACCTTATTCTTCTCTCTGTTTTTTGCAGGTTTTGGTTAAAGTCAGAGTCTTTACATGTCTGGTTGTTGCCaaatgtctatatatatatacatattacagTTTATCATTGTGGAGACTTTATTTTTATACAACCCCTTCAACAATATGAATACCACAGATATTAGTACTTTGTACATTGACAGCCAGGGATCTAGACAGGTTGTAGATGTCGCCTCCCACCGATAACTGGAGGTGCAATTACTTCTATGCATTTGTGTGTTTTCAGATGCATCTTGTTCTTTTCGTTCTGAGCTACCTGGGCATGAAACCCAGGCtggtgtatgtgtttgtttatgtggAAGATGTTTTATGTCTTATTTATTctctctgatgatgatgatgatgatgattaagtGATACAGGTCTTTAATAAATGTGTCAGCTAAATCCAAACTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09374 LHX3_4; LIM homeobox protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2475909 lncRNA upstream 56401 23260168 ~ 23261360 (+) True G2166066
TU2475850 lncRNA upstream 120876 23193035 ~ 23196885 (+) True G2166020
TU2475833 lncRNA upstream 125820 23181983 ~ 23191941 (+) True G2166007
TU2475838 lncRNA upstream 136051 23160072 ~ 23181710 (+) True G2166008
TU2475796 lncRNA upstream 192153 23123195 ~ 23125608 (+) True G2165972
TU2476192 lncRNA downstream 46736 23372100 ~ 23372305 (+) True G2166339
TU2476197 lncRNA downstream 55287 23380651 ~ 23380947 (+) True G2166344
TU2476187 lncRNA downstream 74307 23399671 ~ 23465615 (+) True LOC110509825
TU2476188 lncRNA downstream 80655 23406019 ~ 23406856 (+) True LOC110509824
TU2476304 lncRNA downstream 317368 23642732 ~ 23647054 (+) True LOC110509829
XM_021590939.2 mRNA upstream 1327520 21985765 ~ 21990241 (+) True trim32
XR_005040326.1 mRNA upstream 1342781 21963673 ~ 21974980 (+) True LOC118945260
XM_036967895.1 mRNA upstream 1442690 21749280 ~ 21875071 (+) False pappaa
XR_005040484.1 mRNA downstream 54541 23379905 ~ 23382422 (+) True LOC118945326
XM_021590950.2 mRNA downstream 80639 23406003 ~ 23408940 (+) False LOC110509824
XM_036967257.1 mRNA downstream 86178 23411542 ~ 23465618 (+) False LOC110509825
XM_021590951.2 mRNA downstream 86179 23411543 ~ 23465618 (+) False LOC110509825
XM_036967310.1 mRNA downstream 143036 23468400 ~ 23525398 (+) False LOC110509345
TU2475799 other upstream 183471 23125780 ~ 23134290 (+) True G2165973
TU2475443 other upstream 476280 22837071 ~ 22841481 (+) True G2165628
TU2473579 other upstream 1716709 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 2096580 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 3519987 19795260 ~ 19797774 (+) True G2161678
TU2476233 other downstream 190258 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 460255 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 1175044 24500408 ~ 24532154 (+) True LOC110509859
TU2478131 other downstream 1874255 25199619 ~ 25202641 (+) True LOC110509866
TU2480075 other downstream 3137937 26463301 ~ 26464561 (+) True LOC110509876

Expression Profile