RNA id: XM_021590950.2


Basic Information

Item Value
RNA id XM_021590950.2
length 2633
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110509824
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23406003 ~ 23408940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACTACCGCCCCTGTTGAGTTACATTGTAGCAAGCATAGCCATCTATGTCAATACAATGATGTATCAGAGGGCTGTAATTACTGTTTGTTGTTTCTGAAAGGTCTTCATGTGAcgagttataacatgataacttGCAGCAGTCGTTTCACAGCATACTACGACGAGTTTGAGGAACTCATGTACGAGCACCGAATCGAATGCTGAGAATTCATTGCGCAAGACATCTTTCAATAACTCGAAATCATTTTTCTAAACGAACGAGCCTTGTTGCCTTTTGGATGCCTGTAGCGACAGACTCCAAACAGACCTAATCAGAGGCCCACATTCCATGCCTGGGGTTCCGTTTTAAGCTCTAAGCCAGTCAATGATGCTAACCCCCACCACCCCTGAAGCAGAGGACAAGGCCTATTGCTGCGACTCCCCACAGAAGCTTGTGGCTCAATTCTCCAACTCATGCCTGTGATCCCCATCCCTCGGCGTGTGCGTAGCTTCCATGGTCCCCACTCCACCTGCATGCACTCGGCCTGTGGGTCTGCACACACCACCCAGCTTGTGCGCACCAAGTACAACAACTTTGACCTTTACCTGCGCTCACGATGCATGTACGGCTTCCTGCGCTTCCTGCTCTACTTCGGCTGCAGCCTTCTGACCTCCCTCCTCTGGGTGGCGCTGTCGGCTCTATTCTGCCTGCAGTACATGAGCGCCCGTGTCTTCCTGCGGCTGCAGTACAAGCTGTCCGTCATCCTACTGTTGCTAGGACACCGGCGCCTTGACTTTGGGGTGCTCAACAACCTGTTTATCTACAGTATGCAGGTCACAATGTTCCTGGTGGGAGGCCTGGGCTGGTGCTTCATGGTGTTTGTGGACATGTAGCTTCTGGTGACAACAGTGACCATGGATtttttattgtttaaaaaaatgtaacctttatttaaccaggtaggccagttgagacctggccaagataaagcaaagcagtgcggcacaaacaacaacacagagttacacatggaataaaccaacgtacagtcaataacacagtatgggggaaaagtctatatacagtgtgtgcactGTTATATACCAATGTCAGTACCAAAACATTACCACACAGCAGCAGTTGCTATGAAGGCGTAAGGATGACCAGGAATAGAAGGTGGACAGAATATATGGTTATACTCTGGTGCTATTTGCCTGAAAAAAGCTGATGCATACTTACACTAAGACTTCTGTAATAACAAGCCTTACTTTAGTTTGGACAATGAGGTGTGGGATGCCTCTCAAGACCCTAGAAAGGAAAACATGCTGTCTTCTGTTTGACTGGAGAAAACAAATCACGCAAAATGTTGAATTCTAAGCATAAAGGATACGTTCGTATTGGTGTTGGATTCAAATCCCTTGGTGACCAACATTCTTTTTGTAACGTTATTATTTTACACATcttcttttcatttaaaaaaaagcaaCAGTATCGTGCTGTAAAGTATATGGATAAGTGAGTATGTGTTAGTGTTTGCAGATTGTGTCTTATTGATGCCACTAATATCTGCCATGGGCATGGCCTGCTGCTTGAGCTGTGTCATCGAGTCTGTAACAGTGCGAGTTAGTTACAGTGGGTGGCTTTGGGTGAAGTGGTCATTTAGTCCCTCACATGGTCCCAGAATCCCTCTCGCAGAGAGAACACTCTGTTCGGCCTCCCTCAGAAAACAATAGCCAATCACAGCCAGACACCTCCGTCTCTGCCAACCAAAACAATGGCTGTGGCTGTGTCCCAATGGCCTCCTTTACTCAGCTTCTTCCCTACACTAGAAGTGATCTGATAAATATAGGAAAGGCTGTAATGATAGGATGAAAACCTATTCAGAATGTTTATCATTGTGGTCATGTGTAAAGCCTGTAGTTTTCACTGACCATGTGCCAATAACTTTCTCATTGTTAATTTTAAGTACTGAAATCCTGATCAATTTCTCCTAAATTCTCCTCCTTTCCTTGTCCCCTTTTCCACAAGCCTAGGTCCTGGCCAGGAAAAGGTCTGGCCCTAGTTATAGTCACAGCCTCTGTTTCAGTACTTAAACAGTAAACAGTGTACAAGCCAAGTTTCCACCATGCTACTTTCTATTCAGTCTGTTTCAGATCAGTGCTCAATACTAAGGGAAGAAAACCATTTAAAATATTTGGGACTCGGCCCCAGTCGTTGGATGGAGTTTAGAGATAGAGAACTCATCTTaatatctgtgccattatagtgtCTGTGATAGCCAGTGAGACTACAACCCATAAGAATCCctacccagttgactactttgacCAATTTAAAATGGCGACATGGCTGAGGACTGGCATTGGGCCGAAGTGGGTACGCAGCACAACCCTGTATTGTTCTAGGATCAACTCATCAAATGCCTCATACTCTGGGGCACTCATATTTGTTAGCCTAGTTCGTATGTCCTGTTAAAACTGAAAAGAAGGAAGAATTGCGTTTTTGACATACAGTTCCTAAAGGAAGtgttcatacctcttgacttattccacatttggttgcgttacagcctgaattcaaaatggattccaatttaaaaaatgatctcacccgtctacacacaataacccataatgacaaagtgaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2476197 lncRNA upstream 25056 23380651 ~ 23380947 (+) True G2166344
TU2476192 lncRNA upstream 33698 23372100 ~ 23372305 (+) True G2166339
TU2475863 lncRNA upstream 44789 23267880 ~ 23361214 (+) True G2166030
TU2475909 lncRNA upstream 144643 23260168 ~ 23261360 (+) True G2166066
TU2475850 lncRNA upstream 209118 23193035 ~ 23196885 (+) True G2166020
TU2476304 lncRNA downstream 233792 23642732 ~ 23647054 (+) True LOC110509829
TU2476328 lncRNA downstream 250184 23659124 ~ 23659329 (+) True G2166463
TU2476329 lncRNA downstream 250939 23659879 ~ 23660149 (+) True G2166464
TU2476389 lncRNA downstream 312630 23721570 ~ 23722562 (+) True G2166518
TU2476419 lncRNA downstream 411442 23820382 ~ 23823864 (+) True LOC110509838
XR_005040484.1 mRNA upstream 23581 23379905 ~ 23382422 (+) True LOC118945326
XM_021590949.2 mRNA upstream 80639 23311636 ~ 23325364 (+) False LOC110509823
XM_036968171.1 mRNA upstream 80639 23317757 ~ 23325364 (+) False LOC110509823
XM_036968169.1 mRNA upstream 80639 23317761 ~ 23325364 (+) True LOC110509823
XM_021590939.2 mRNA upstream 1415762 21985765 ~ 21990241 (+) True trim32
XM_036967257.1 mRNA downstream 2602 23411542 ~ 23465618 (+) False LOC110509825
XM_021590951.2 mRNA downstream 2603 23411543 ~ 23465618 (+) False LOC110509825
XM_036967310.1 mRNA downstream 59460 23468400 ~ 23525398 (+) False LOC110509345
XR_005040344.1 mRNA downstream 59460 23468400 ~ 23531930 (+) False LOC110509345
XR_005040345.1 mRNA downstream 59460 23468400 ~ 23531930 (+) False LOC110509345
TU2475799 other upstream 271713 23125780 ~ 23134290 (+) True G2165973
TU2475443 other upstream 564522 22837071 ~ 22841481 (+) True G2165628
TU2473579 other upstream 1804951 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 2184822 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 3608229 19795260 ~ 19797774 (+) True G2161678
TU2476233 other downstream 106682 23515622 ~ 23525331 (+) True LOC110509345
TU2476421 other downstream 376679 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 1091468 24500408 ~ 24532154 (+) True LOC110509859
TU2478131 other downstream 1790679 25199619 ~ 25202641 (+) True LOC110509866
TU2480075 other downstream 3054361 26463301 ~ 26464561 (+) True LOC110509876

Expression Profile