RNA id: TU2476233


Basic Information

Item Value
RNA id TU2476233
length 2038
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC110509345
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23468400 ~ 23534217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatctctctctctctgccagtacAGCACTAGTGGATCATGGTTAGGCTACATTCCACAATGTAGCATCTTTCCAAGCTAACGCAGTTATATTTCCTCAATTTAGCAAATAATATAGCATATCTTAGCAATTAGGGTCATAGCGTTCCCTAAAAGTTAGCACCACTGCAGTTTTGTCTTGGCATTTTACTCAGCTAGCTATATAGCGGTAGCATCTACCCCTAAACTCTTCTGGtcatattcacaaagcatctaagaataggagtgctgatcaAGGATCAGGTCATCCCTCTTATTCATTACCTGATCATAGATtagcactcttactctgagacgctttattaATACGGAACCTGTGTCTTTTTGGTACTGCTGTCACTTCTATAGCTACTATCACTGGCCAGGCTCCAAGGAATGTAATCCCATTACATTAACCCAATCAATTATTCACTGGGCCGTGTTCGTAGCCAGGCTGTCATTTCAGTGAGCCCCTCTGTTTATGACTCTCTTTTCATCCCAAAGCGTGTGTGGCTGGAAATTGATTCCCATCAAGCCCTCATAgccgcaagtgtgtgtgtgtgtgtgtgtgtagaaatgGAGGTGTTGTAGAGCAAATAAAAACTTTATTAATCATGTTGGGGCTGTTAGTTTCAGGGCAACGGCAGGTGTGACATACACATCCATCAAAGTTGAGGAAGAATATAAACATTGCCTGTGTTTGCTTCTATTTTTGAAGTATTTACTTATGTATGGTTAGTATTAGACTGTGGTAAGTGTCCCCTGAGACATTCTGTCCTGCCCGCCCATCTCAACGAATTCTAGAATATTGCTCATATACGTGTCAGCTTTATTCATGTAACCGTCCCGCTCACGTATTGTTATCAAATCAAAGTCAGCCAACTTACTCTTCCTCACACCCCTCTATCTGTACCCCTTCAGGTGGTTTTGGGAGCGCCCCTGTGTTCGGTAGCCCCCCTGCTTTCGGGGGCTCCCCAGCGTTTGGGGGGTCAGCAGCGTTTGGCTCGACCCCGTCCTTCAGCAGTCCCATGGGCTCCTCAGCCAGCAAGGTGTTTGGCGAGGGCACGGCAGCTGCCAACGTGGGAGGATTCGGCTTTGCTTCCACTCAACAAAGCACACTGTCGTTTGGTGCTCTGGCCAACCAGAGTGCCCCATCATTTGGTAACCTGGCCCAGCAGCAGCAGGGGTCAGGGTTCGGAGCTCCTCAGCCCAGTGGCTTCTCTGGGTTCggacagcagggaggaggaggcTTTGGGTCTGCTGGCGGTTTTGGATCGAATCAatcaTCTTCTCAAACGTTTGGAGCCGGTCCGGGTTGGAGAAGCTAGTTTTTGTTGACCCCCCCCGCCCCCGTGCGAGTGCACCCCTGGTGTGTGTGACCAGCAACACTGCTCTCTGCAATCAAGCTCTTTGAGTAGACTACACCtaaagggagaagggggaggaagggtgCGCAGGTTGGGGGTGGAAGGAAGGGGGGTTGAGGTGAGACAGACCAAACTAGTTGTAAAGTATGTAGACTGATCTTATAGACCATCGTAATAGTCTTACGTCAAGTACATCAGTGGTGACTACCATGTGGAATGTGTATTTGGATGAGTGAATTTACATTTTGTGTTTTTCAAATCAGAACAGTTGGCTGTAACGTTATAATAGATTTGTTCATCCATATGAACTTTGTTTTCCTCTATAAAATAATTCTGCAGTTCATAATTGAGCCTCGTTCGCACATATTTTGAATCTGGGAAAGTTTTAAACTTTCAATTGAAGTTTTAAGATATCTTATATTCCAAGCTTTAATAGTTCTGATAAGAATCAAGTTCTTAATGTTTCTCAAAACATGTCTTGTCTCACTAAATGGAGTAGAAAATACCATCCTCCGCAACAATAATTCATAATTTACTGACTCCAGGCAAGACTTCGGCAGGTCGTTGATAGAAGTATCAACTCTTGATTGCGTACAATGAACTGCAATATGAGAAAATATTTTGCTTTTTATAATGCCTACTGCTGGTACCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2476187 lncRNA upstream 50007 23399671 ~ 23465615 (+) True LOC110509825
TU2476188 lncRNA upstream 108766 23406019 ~ 23406856 (+) True LOC110509824
TU2476197 lncRNA upstream 134675 23380651 ~ 23380947 (+) True G2166344
TU2476192 lncRNA upstream 143317 23372100 ~ 23372305 (+) True G2166339
TU2475863 lncRNA upstream 154408 23267880 ~ 23361214 (+) True G2166030
TU2476304 lncRNA downstream 117401 23642732 ~ 23647054 (+) True LOC110509829
TU2476328 lncRNA downstream 133793 23659124 ~ 23659329 (+) True G2166463
TU2476329 lncRNA downstream 134548 23659879 ~ 23660149 (+) True G2166464
TU2476389 lncRNA downstream 196239 23721570 ~ 23722562 (+) True G2166518
TU2476419 lncRNA downstream 295051 23820382 ~ 23823864 (+) True LOC110509838
XM_036967257.1 mRNA upstream 50004 23411542 ~ 23465618 (+) False LOC110509825
XM_021590951.2 mRNA upstream 50004 23411543 ~ 23465618 (+) False LOC110509825
XM_021590950.2 mRNA upstream 106682 23406003 ~ 23408940 (+) False LOC110509824
XR_005040484.1 mRNA upstream 133200 23379905 ~ 23382422 (+) True LOC118945326
XM_021590949.2 mRNA upstream 190258 23311636 ~ 23325364 (+) False LOC110509823
XM_021590958.2 mRNA downstream 29601 23554932 ~ 23569102 (+) True LOC110509828
XM_021590959.2 mRNA downstream 74111 23599442 ~ 23647056 (+) False LOC110509829
XM_036968331.1 mRNA downstream 74111 23599442 ~ 23647056 (+) False LOC110509829
XM_036968333.1 mRNA downstream 74111 23599442 ~ 23647056 (+) False LOC110509829
XM_036968334.1 mRNA downstream 74111 23599442 ~ 23647056 (+) False LOC110509829
TU2475799 other upstream 381332 23125780 ~ 23134290 (+) True G2165973
TU2475443 other upstream 674141 22837071 ~ 22841481 (+) True G2165628
TU2473579 other upstream 1914570 21600418 ~ 21601052 (+) True G2163804
TU2472832 other upstream 2294441 21197918 ~ 21221181 (+) True LOC110509811
TU2471264 other upstream 3717848 19795260 ~ 19797774 (+) True G2161678
TU2476421 other downstream 260288 23785619 ~ 23791664 (+) True LOC110509837
TU2477605 other downstream 975077 24500408 ~ 24532154 (+) True LOC110509859
TU2478131 other downstream 1674288 25199619 ~ 25202641 (+) True LOC110509866
TU2480075 other downstream 2937970 26463301 ~ 26464561 (+) True LOC110509876
TU2480105 other downstream 3003641 26528972 ~ 26532780 (+) True LOC110509877

Expression Profile