RNA id: TCONS_00057367


Basic Information

Item Value
RNA id TCONS_00057367
length 3522
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id XLOC_028885
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31241123 ~ 31245599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGTTATTCTAATTACCAGGTGTTATTTGAGGGTTGGCACAAGATGTGGGAGTCTGGTCTTCATGGGCTGCCCAGTGCAGACATACTGTGGCTTAAGGAGGATGCTGAAAGGGGACTCTTTCAGAGGGCCATGTCTTATAAAGACAAACATGGAAACAGAAAGTGGAGGAAAGTCCTGAAGGATGACCGGATGTGGTTTCACCCTCCAGAATTTCCTGGAGTGGTGGAAGGAAAAGTCCCCTCAGCAGACTCCTTTTTTCACAGCTCCGTTTTTTTCTGGAGACCAGTCGGTGTGTGGCGTTACAGTCTTCGGTGCCCAAGGTCTGACTGCCCAGCACGCACCAATCAGAAGGCTTTTCTCTACCGTTGTGGGTATTCATCCACGGTAAGACAGATCTGCCACATGTCTGGCTGGTACTCCATGCTGACTGAGGTCCTGGCATGCAACGCCTGTAGAAAGGCTGCAAAGGAGTCGGAAGAGCATACTATTGGTCGTTTCCTGTCATGGGATCAGTGCATCCTTAATCAGCTCAGTCCAGCTCACAGAGCGGTGTTTCCTGCTGTCTTGACGCTACGGCGTGGCGTGGACAAGCAGGTGATCCGCCTGATGAGGGATCGCACTGAGGGAAACACCATGGTGAAAGTTTGGAGACAGGTGCAGGAGAGCCACTGCGAGGACTATCTGCAGAGAAAGGACTTGTACACCACTCTTCTCAGCCAGTACAACAAACCTGGGAAGATCACTCGGAGTTTGTGCCAGCAGTTCCAGCGACCACCAGCACGGAGAGAGCCGCCATCTGCCAGACTGATGAGAAAGGCGTTCCTTATCTCAGAGGCAGATAACATCGAGGACTACCGTACTCAGATTATGTCCACATTTGGGCAAGTCCTGAAGTACGACTCCACCAAGAAGATCTGCAAGAAACTCTCTGGCGATGGAAAAGGCACTGCAGAGTGGTGTACCAATGTGGCCAACGAGCAGGGGCAGATCCTCATATCTGTTCTCACCTGTGAGGAGTCATTGGAGAAGATGAGGCCGATGGCTGAAGGCCTCATGGAGAGGTACAGGAGAGCTGACGAGGCACCGCCCGAACTCATGTATGTGGATCGTGGCTGCTGTCGCGTCCACGCTGTGTCCTCGGTTGAGCAGCTCTTCAGTGACTGGACGGACAGGGGCATGCTGGTACGGCTGGACATCTTTCATTGGATCCATCGATTCGATGCAGCCCTACGGACAGATCATCATCCAAAGTATGCCCTGTTCAAGTCTGCCCTCTCTGCTGCCGTCTTTGCCTACAACAAAGACGACATGGCTCTTCTGGTACAGGCGATACGTGCCGGTCACCCAACCAACTATGCCTCCCTGACTGACAGCCAGATCATCGAGCTGCGTGTCAGTAAATATGACCTCAGCCATTACGTCAGGAGGATCACAGTTGGTGCACAGGAAACATGTGCGCGCGTGCAGTGCGCCATTGATCTCCTGAAGGGAGCCGCAGGGATGGATGAGAACCAGGTGCATCTGTTTAAGGACTCTGCAGCCATCGACCACGTCTGGGAGAACCAGCAGAAGCACCTTGAATGCATCCAGGATCCACCAGGGAGGAACATGTACACCATCACCAAGTATGTGACCCGTTACGGTGTTCGTCTTGCGCGGTACAGTACGGTGAGAGGAAGCAACAGTCTGGAGGGCTTTCATTCCTTTCTGCCTGACATGATCCCGGGACCCCACTGTGCTGCTGTCCCGTTTCAAGTCTATCTGCTGGCTGGCATCGCACGCTGGAACTCTAACAGGGAGTCAGCCAGCGTCCAAGGGCGGAAAGGGAGGAAACATATGGTGTACATGTCTCCTCTGGTCCATCGCCTAAACCAAAGGTGCCAGGAGCTATTTGGGGAGGTGGAGGAGGCAAACTACAGGCCTCCGGTTCCTGCTGGTGATGAGCGCATTGGTCTGGAGTACCTGTTTTCCCAGTCCTCAGAGCCCTTCAGTGCTCCTGATCATTACGCTCAGACTAGAGAGACACTTCAGGCAGATGAGGATGAGGACGAAGATGTTCCGGCTGGGGTggcagaggaagaggaagagctgCAGGAGGAAGATGATGATGTGGGCTACTCCTCAGACCGCGAGAGGGACAGCCTGACTCCTCTGAGGAACCGTCTGTGCCTCACCGATCAGGCAGTGGCTGCTGAATTTGACCCCTGTGTGGAGGACGTGTGCGGTCCCAATCATCTGCCTGGGTACCAGCACGTAGAGGATCTGTGTAAAGTCCTTGTTGAGATCGCCCTGGAGGAAGGAAAACTTGCCCTAAATGAGTCGACCAGGCAAAAGGTCATCAGCGCCTGGAACAAGCTTGACCTCCATGACCGCAGCATCCAACAATTCGACAGCCTCTACTCTGCACGCTGGGGCAATGCTCTGTTTGGCCGCACCAGTGGAGATCCGACTGAGGCGTCCCTGGTGCAGAAGCTCAAGTTCAGCAAGCGGTACTCAGCCGCACACTTGGTGGACTCCAGAAAGAACCGGCTGATGTACTGCCTGGTCAAACAGCTGTGGCTTCATCCTGGTGTTGGAGGAAAAGCTAAAGGGTCACCGCTGAAACAGCAGATCACTAAACTGTACCAGCGTGTGCAGCAGAGAGTGACGGTGGACGATGATCAGCTCAGCAAACTTGGGATTCCCATCctgaaaataaattcaaagtgcGTGAGCGAGTTCATCAGGAGGCAGGAGGCACTGTCAGCCACAAACGTCACCGACCAGGGTCTGTCTGTCCTCCGTCGTCACCAGAGCGTCTCCAGCACCAGCCAGCCCCCCGCTGAGGAGCTTCCAGAGGAAAGACCCCATACCAGCCGGCCTGCAGTGCAGTATCCCATCACCACTTCTCTGGCCGGCACCCGAAAGTTGAAGCAAAGGCTCCCGCAAATCTTACCTGTCCCTCCCTCTGCTCTTGCTCAACCAGTTCCTGCGCCGGCCCATTCGATGCCCGCAGGACTccggcacacacacactccgctgACTGCACCTCCCGCTGTTTCCTTGCCGCAGGCATCCACTCCGCTACTGTTGCCCTCAAGATCAACAGTCTACAAGAGGAAAAAGGCAGAACTCAGTGGCTCTGGACATCCAACCTCAGTGAAGGTTTACATCTGTGCTCTGTGTGGCCAACCAACTCAAGGCCACAAGAAATACAGAAAGAAGAGCTACTGTGAGAGCTCCAAAGCCTCCACGTCCACAAACCTTGCTGGGCAGACGTTTGACTGTTTTGAAGACTTTAAAAGGGCTGTGGACGTTCTCTTGGGCTCTCAGTCTCAGGCCTCCGAGTCTGTCTAACTGGACCTCTATCCATGTTGCGGTTCATAGTTCTTGACTTGTAACAGTATTATTGTTGCAAAAATGGATATGTTATAATAACAgttgattttttaaaagtttacagGTTTTTACGGTTTGCACTAATTTGTTGACTGTATTTTACACTTATTGTTGCACAAATGTTCGCAATATTAACAGTTGAC

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055897 lncRNA downstream 92040 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055896 lncRNA downstream 143501 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00058243 lncRNA downstream 178027 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00058242 lncRNA downstream 178352 31060357 ~ 31062771 (-) False XLOC_028859
TCONS_00058241 lncRNA downstream 178848 31060357 ~ 31062275 (-) False XLOC_028859
TCONS_00057368 lncRNA upstream 142 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00058244 lncRNA upstream 310295 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00055918 lncRNA upstream 310295 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00057369 lncRNA upstream 380667 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00058245 lncRNA upstream 389004 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055885 mRNA downstream 176539 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA downstream 176539 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055886 mRNA downstream 176539 30886750 ~ 31064584 (-) False XLOC_028859
TCONS_00055895 mRNA downstream 177018 31021628 ~ 31064105 (-) False XLOC_028859
TCONS_00055887 mRNA downstream 309827 30925543 ~ 30931296 (-) True XLOC_028860
TCONS_00055913 mRNA upstream 2369 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA upstream 56861 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA upstream 57101 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055916 mRNA upstream 289850 31535449 ~ 31698009 (-) False XLOC_028888
TCONS_00055917 mRNA upstream 289850 31535449 ~ 31784872 (-) False XLOC_028888
TCONS_00055912 other downstream 13496 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 16473 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 17529 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 19641 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 21758 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 1010673 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 1011983 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 2144623 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 2146176 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2721318 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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