RNA id: TCONS_00057368


Basic Information

Item Value
RNA id TCONS_00057368
length 785
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id XLOC_028886
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31245741 ~ 31246667 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccaatattatatactgtcatcatggtaaagataaattataagaaattaagttattagaactattatgtttagaaatgtgcctgaacaagtcCTCTCTCCATTAcacataaattgtgaaaaataaactcaaatttaacaggggggcttataattccggCTTCAACTgtgtgcattaataaataaaattcatcacACTAAGACACTGTCTTCTGATAATCACAACTGTGCTCATTTAGGAGCCGGGGAAGCAAAGAGAAGAAAACGTTCCTGTGAAGATCTGTCACAGAAGCCACACTCAGACTCTCCACTGTCTGCTGCTCCTGCGTCGACTTCTTTATTGgaggctcctgcatcagcctcatcagttcctggccagtcttcttcatcggctcctgcatcagcctcgtcATTTCCTGCCTCtgcttcttcatcggctcctgtATCAGCCTCGTCAGTTCCTGCCTTggcttcttcatcggctcctgcatcagcctcgtcATTTCCTGCCTCtgcttcttcatcggctcctgcatcagcctcgtcAGTTCCTGCCTTggcttcttcatcggctcctgcatcagcctcgtcAGTTCCTGCCTTGGCTTCTTCttcggctcctgcatcagcctcgtcAGTTCCTGCCTTGGCTTCTTCttcggctcctgcatcagcctcgtcagttcctgcctcggcttcttcatcggctcctgcatcagcctcgtcagttcctgcctcggcttcttcatcggctcctgcatcagctTCTGTGTCAGCTTCTGACGTTC

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0019441 tryptophan catabolic process to kynurenine biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0004833 tryptophan 2,3-dioxygenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0008233 peptidase activity molecular_function
GO:0048037 obsolete cofactor binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057367 lncRNA downstream 142 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00055897 lncRNA downstream 96658 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055896 lncRNA downstream 148119 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00058243 lncRNA downstream 182645 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00058242 lncRNA downstream 182970 31060357 ~ 31062771 (-) False XLOC_028859
TCONS_00058244 lncRNA upstream 309227 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00055918 lncRNA upstream 309227 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00057369 lncRNA upstream 379599 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00058245 lncRNA upstream 387936 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA upstream 387936 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055885 mRNA downstream 181157 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA downstream 181157 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055886 mRNA downstream 181157 30886750 ~ 31064584 (-) False XLOC_028859
TCONS_00055895 mRNA downstream 181636 31021628 ~ 31064105 (-) False XLOC_028859
TCONS_00055887 mRNA downstream 314445 30925543 ~ 30931296 (-) True XLOC_028860
TCONS_00055913 mRNA upstream 1301 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA upstream 55793 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA upstream 56033 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055916 mRNA upstream 288782 31535449 ~ 31698009 (-) False XLOC_028888
TCONS_00055917 mRNA upstream 288782 31535449 ~ 31784872 (-) False XLOC_028888
TCONS_00055912 other downstream 18114 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 21091 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 22147 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 24259 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 26376 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 1009605 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 1010915 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 2143555 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 2145108 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2720250 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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