RNA id: TCONS_00055914


Basic Information

Item Value
RNA id TCONS_00055914
length 1814
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_028887
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31247968 ~ 31311955 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acCAGATGCTAAATGATATACCTGCTGTTGGCATagatgataaagtgtccaaacacagagaaaaactcctgcttgagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaagaGAGAATGAGGGgaggaaagaggaggaacatcatgtcaaaattgaggaaaaaaacaatttacatactgatggtattttgaaaaggacaGACAAGACTCGTTTCACTTGCACTCACTGTAGAaggagttttggaagaaaaggctatcttaagattcacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagctgctcatcacaccttaatctacacatgatgatccacactggagagaaaccattcacgtgcactcagtgtggaaaaagtttcaggaaatcatcacaccttaataaacacatgatgagccacactggagagaaaccattcacttgcactcagtgtgggaagagtttcagtcaatCATCATCCcgtaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagagttttagccAATTATCAttccttaatcaccacatgatgatccacactggagagaaaccattcacatgccctcagtgtgggaagagtttcagcaaatcgtCAAactttaatcaacacatgagaatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagccaatcatcacaccttaataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtggaaagtgtTTTACCTGCAtatcaaaccttaatcaacacatgaggatccacaccggagagaaaccattcatatgcactcagtgtgggaaaagtttcagccAGTTAACAtcccttaattaccacatgaAGTTCCACGCTGGAGAGATAGAGTTCACTTATACTTAAGCCacagtcacactggactttttataacttgacctctctggacagaaatgtaaaatatggaccagtcGCTCACTTGACCccctggggtcgaagaccgcgtatacgcgttctgacaagtttttacctcattgagctgaaatgaacctaaattacactttcagttttgatcgtacagataagatcaatacatcaatcgaatctgttaggtgtctacttttaaatgtgtacactcacaacaaaaacaaagtagTGTGCTTTTGTAAAACaaggataataaacagtgtaggcattctgtcttttctctctccgtgaactgtttttagaaacgcgtcagtaaaatgcgctAAAACTCAGCttaaacgcagctatgcatgttgaaaacaaatattgtttgataaaaTAATCAGTATGAAAGCAACGCTATGTCTAGcttctcagtctgagctcattagagttaatgcgaccacgcccacgaAGCTTTGACATTACAAACAGCCTGCATGAGGAGCGCGCAACAGTAGACTGTGTCAGGAAAAACAcgtcattaaaatgaactgaaactcagCAAATACTCAACAAAGAAACATGTGAGATGTTTCTAaagaaagcttgatatgtctacttttgcgaTAAGTCTTACGATAAGTCTTATTCTAACGTTTatgacctttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057368 lncRNA downstream 55793 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00057367 lncRNA downstream 56861 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00055897 lncRNA downstream 153377 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055896 lncRNA downstream 204838 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00058243 lncRNA downstream 239364 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00058244 lncRNA upstream 244023 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00055918 lncRNA upstream 244023 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00057369 lncRNA upstream 314395 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00058245 lncRNA upstream 322732 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA upstream 322732 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055885 mRNA downstream 237876 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA downstream 237876 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055886 mRNA downstream 237876 30886750 ~ 31064584 (-) False XLOC_028859
TCONS_00055895 mRNA downstream 238355 31021628 ~ 31064105 (-) False XLOC_028859
TCONS_00055887 mRNA downstream 371164 30925543 ~ 30931296 (-) True XLOC_028860
TCONS_00055916 mRNA upstream 223578 31535449 ~ 31698009 (-) False XLOC_028888
TCONS_00055917 mRNA upstream 223578 31535449 ~ 31784872 (-) False XLOC_028888
TCONS_00055920 mRNA upstream 342046 31653917 ~ 31668301 (-) False XLOC_028888
TCONS_00055922 mRNA upstream 348486 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055921 mRNA upstream 348486 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055912 other downstream 74833 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 77810 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 78866 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 80978 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 83095 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 944401 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 945711 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 2078351 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 2079904 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2655046 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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