RNA id: TU2478131


Basic Information

Item Value
RNA id TU2478131
length 2332
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110509866
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 24944825 ~ 25202836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGAGCAGGATTCAGCGCCTCTGGTGTCTTGGACATTTGTCAAGGTTGTTTTTTTTAGTGTGTGAGGCATGGGTATAAAATGGAGTATTGTTTTTCTCCCTCTTGATTTAGGCTATTTTTTTCCCATGGGGACTATCTGTCCAAAGCCCGGTGTGTTAGCTGGCCAGAGATCAAGGTGGCCATTGCACGCTCCCTAATgaatttcctttctctctctctctttctctttcttgttCTCTCTTCCACTGCCTGTCTCAGCAGCCATTGGCGCTTCCTACAACTTCTCCTTCCTCAGTCCTCAGGGTCTAAACTTCTCCTCTCAGAGCTCAGCCCCCTTCTGGTCAGTATTCACGCCGAGGGTGGTCAGCACAGCGGTGGCCAGGTACAACTTTGCAGCACGGGACATGAGAGAGCTGTCACTCAGAGAAGGGGACATCGTCAAGATCTACAGCAAGATTGGAGGAGACCAGGGCTGGTGGAAGGGAGAGGCCaatgacaggATTGGCTGGTTTCCCTCAACGTACGTTGACGAAGAAGGAGTTCAGTGAGGCTCTGATGTCACCACGGCCCCAGTCCAATCACATCACACCTCGCTCCACAGTCCTCAGAGAGGACTAGTTGGTTTCCAGGGAAACACCATGTGGAATACTTTTTGCTGGATACTGATTTTGCAGTGAACAACGTTTCTACTCCGGTTTTCTTCCTACTTGTATGCATCGGCTTTGcttatgttgtttttttgtaaGATCTTGTCCTGTTTGATCTCTGTGAGGAAGTCTGTCTGCCTCTTGTTGTTCTGAAGAGGCTGACGTGGACTGTGAAAAATTGTAGAGAGGCCcaacacacagtacatacagatACTGGGAACCTATAGTTTTATTACATAGATAGACTCCTCCTTTGTTGCAGGTCTATGGGAGGGGCTAATATAATGTATAGATAATTTATTTAACAGAGATCCTAACAATTATTGTGTGTTGTTGAGATTAGCAACACAGCAGACGAAAAGAAAAAGAACAAAACACAGGTTTGTGTCTTTTTGCTGGAAGATTTTGCcttagttgtcatggtgatgccTTGAAGGCttacaggagagagggaaggagaaatggccttgcacacacacacacacacacacacacacacacacacactcacacttgcCCTTGCCTTTGAAGTGTGGTCAATGCTCACAGGATTCGCCAGCTTTCAGTCGAGCTCTACCCATCCATCCTCTACTACAGAGTGGACTATggatggagaagaagagagaagggggcgATGGACCATTTGGGATTGCTCCAGTCATCAACACTCTATGTGACTGGTGCAAGAAGGGAGTTAGTTCATTAATTCGTCCCCCTTGCCGACTGAAGATAGACAGTGGCCCTCAGAAACATTGCACTGGAGTCGGGGAATTAACGGTTCCTGTCGCAGCCAAAAAACACAGCGACCCACTGAAAGGTGTAATGTTAGGTAGAATGGGTGTACAGATAGAAGGTTCACATCAGTCTCAGCACTTTACGTCTGTGGGATCTCCTCACAATCAACAGGATGCAAAAAGGGAAACTTTAAGTCAGTCCAACACCCACTTAATGCACTGAAAATCTATCTTGGTGttcaatgtttttgttgtttttaatttAGTTTTATTTTGAACAAGACCACATTTACCTGCTGGAAACTGGACCAACCTGAATTATTTTAAAGCCAAATGCAACCTCTTTTTATTAATGTCCGCATGAACTTTAACCTAGATATTTGTGTTATCAGTTTGTTTGTACCTTGCCTTATTTTACAAATGGACACATGGTACTGGGACTTTAGCAAGTTTACAATTTAAATCAAATTTTGTTGCTTTGGTGACTGGCGAAGTAATATGGCAGCTCCATGAATTACGCAGAATCAAAAAGTCAACATCATACTATGAGGATCTACCTGAacataatatgaaggtgtcacaaTATGGACATATTGTACACAGTCATACATTTTCTAGCTCAGAGAGAAAACAGTGCAGCTACACTGGATCATTGACTGAATGACCACATCCATTTAATTAGAAGATAGAGATACAGATGGCTGCCATATTCCCTGGTCCCATCCCAGATCAGTTGCCAAGTAGGCTACCCACAATAATCTACTGACCAGAAGGATTCAAACAATGATGTTGGCTGACAAACTAAGACTGATGTGGTGGAAGAGGAAAGAGTACTGTAAGTTTCTGACAATATGTGACAGTGTGCATTCCAAAGGCCCACTACTCCCAAATACAACTCCTGCCATCTAGGATTGAAGGAGTTCATTTTGAGGGGAGTACTTGTtagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2478245 lncRNA upstream 105692 25093108 ~ 25093927 (+) True G2168172
TU2478118 lncRNA upstream 257071 24942271 ~ 24942548 (+) True G2168062
TU2478114 lncRNA upstream 264394 24934516 ~ 24935225 (+) True G2168058
TU2477678 lncRNA upstream 284738 24911725 ~ 24914881 (+) False LOC110509348
TU2477681 lncRNA upstream 284738 24913195 ~ 24914881 (+) False LOC110509348
TU2478296 lncRNA downstream 15265 25217906 ~ 25218151 (+) True G2168221
TU2478297 lncRNA downstream 15698 25218339 ~ 25218553 (+) True G2168222
TU2478303 lncRNA downstream 35169 25237810 ~ 25238139 (+) True G2168228
TU2478308 lncRNA downstream 42865 25245506 ~ 25246268 (+) True G2168233
TU2478533 lncRNA downstream 65922 25268563 ~ 25268850 (+) True G2168443
trnat-ugu-47 mRNA upstream 53707 25145843 ~ 25145912 (+) True trnat-ugu-47
XM_021591030.2 mRNA upstream 261554 24926942 ~ 24938065 (+) False LOC110509865
XM_021591029.2 mRNA upstream 261554 24926954 ~ 24938065 (+) False LOC110509865
XM_021591032.2 mRNA upstream 261554 24926954 ~ 24938065 (+) False LOC110509865
XM_021591034.2 mRNA upstream 261554 24926954 ~ 24938065 (+) False LOC110509865
XM_021591048.2 mRNA downstream 364885 25567526 ~ 25571193 (+) True LOC110509870
XM_021591052.2 mRNA downstream 921264 26123905 ~ 26263903 (+) False LOC110509874
XM_036967882.1 mRNA downstream 921264 26123905 ~ 26263903 (+) False LOC110509874
XM_021591055.2 mRNA downstream 1260622 26463263 ~ 26464615 (+) False LOC110509876
XM_021591056.2 mRNA downstream 1302278 26504919 ~ 26532797 (+) False LOC110509877
TU2477605 other upstream 667465 24500408 ~ 24532154 (+) True LOC110509859
TU2476421 other upstream 1407955 23785619 ~ 23791664 (+) True LOC110509837
TU2476233 other upstream 1674288 23515622 ~ 23525331 (+) True LOC110509345
TU2475799 other upstream 2065329 23125780 ~ 23134290 (+) True G2165973
TU2475443 other upstream 2358138 22837071 ~ 22841481 (+) True G2165628
TU2480075 other downstream 1260660 26463301 ~ 26464561 (+) True LOC110509876
TU2480105 other downstream 1326331 26528972 ~ 26532780 (+) True LOC110509877
TU2480665 other downstream 2119464 27322105 ~ 27324765 (+) False G2170458
TU2480666 other downstream 2119464 27322105 ~ 27324765 (+) False G2170458
TU2482164 other downstream 3100564 28303205 ~ 28313151 (+) True gigyf1b

Expression Profile