Item | Value |
---|---|
RNA id | TCONS_00005293 |
length | 680 |
RNA type | processed_transcript |
GC content | 0.51 |
exon number | 3 |
gene id | XLOC_002857 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007121.7 |
NCBI id | CM002894.2 |
chromosome length | 45420867 |
location | 31019607 ~ 31220558 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
id | description |
---|---|
ZDB-GENE-031118-112 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human PKNOX2 (PBX/knotted 1 homeobox 2). |
ensembl_id | ENSDART00000138445 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00006075 | lncRNA | downstream | 1530269 | 29266270 ~ 29491087 (-) | True | XLOC_002843 |
TCONS_00005269 | lncRNA | downstream | 1883352 | 29128202 ~ 29138004 (-) | True | XLOC_002841 |
TCONS_00006074 | lncRNA | downstream | 2556330 | 28460213 ~ 28465026 (-) | True | XLOC_002834 |
TCONS_00005770 | lncRNA | downstream | 2603177 | 28417651 ~ 28418179 (-) | True | XLOC_002830 |
TCONS_00006073 | lncRNA | downstream | 2635787 | 28382085 ~ 28385569 (-) | True | XLOC_002828 |
TCONS_00005294 | lncRNA | upstream | 158098 | 31262852 ~ 31294777 (-) | False | XLOC_002858 |
TCONS_00006076 | lncRNA | upstream | 158098 | 31262852 ~ 31295006 (-) | True | XLOC_002858 |
TCONS_00006077 | lncRNA | upstream | 973057 | 32077811 ~ 32084121 (-) | False | XLOC_002862 |
TCONS_00006078 | lncRNA | upstream | 973057 | 32077811 ~ 32084624 (-) | True | XLOC_002862 |
TCONS_00006079 | lncRNA | upstream | 1111659 | 32216413 ~ 32250771 (-) | False | XLOC_002863 |
TCONS_00005288 | mRNA | downstream | 4550 | 30997238 ~ 31016806 (-) | False | XLOC_002856 |
TCONS_00005289 | mRNA | downstream | 5821 | 30999751 ~ 31015535 (-) | True | XLOC_002856 |
TCONS_00005287 | mRNA | downstream | 235855 | 30617826 ~ 30785501 (-) | True | XLOC_002855 |
TCONS_00005284 | mRNA | downstream | 1118191 | 29896275 ~ 29903165 (-) | False | XLOC_002853 |
TCONS_00005285 | mRNA | downstream | 1120810 | 29896383 ~ 29900546 (-) | True | XLOC_002853 |
TCONS_00005295 | mRNA | upstream | 194218 | 31298972 ~ 31440500 (-) | False | XLOC_002859 |
TCONS_00005296 | mRNA | upstream | 194218 | 31298972 ~ 31562695 (-) | False | XLOC_002859 |
TCONS_00005297 | mRNA | upstream | 195835 | 31300589 ~ 31563049 (-) | True | XLOC_002859 |
TCONS_00005298 | mRNA | upstream | 633747 | 31738501 ~ 31782616 (-) | True | XLOC_002860 |
TCONS_00005299 | mRNA | upstream | 695458 | 31800212 ~ 31805923 (-) | True | XLOC_002861 |
TCONS_00005286 | other | downstream | 490099 | 30531143 ~ 30531257 (-) | True | XLOC_002854 |
TCONS_00005276 | other | downstream | 1282248 | 29736186 ~ 29739108 (-) | True | XLOC_002847 |
TCONS_00005273 | other | downstream | 1313174 | 29708068 ~ 29708182 (-) | True | XLOC_002845 |
TCONS_00005263 | other | downstream | 2097723 | 28923517 ~ 28923633 (-) | True | XLOC_002838 |
TCONS_00005262 | other | downstream | 2099105 | 28922135 ~ 28922251 (-) | True | XLOC_002837 |
TCONS_00005308 | other | upstream | 1437782 | 32542536 ~ 32610769 (-) | False | XLOC_002866 |
TCONS_00005309 | other | upstream | 1462870 | 32567624 ~ 32610694 (-) | True | XLOC_002866 |
TCONS_00005329 | other | upstream | 2272064 | 33376818 ~ 33376941 (-) | True | XLOC_002883 |
TCONS_00005330 | other | upstream | 2272247 | 33377001 ~ 33377086 (-) | True | XLOC_002884 |
TCONS_00005331 | other | upstream | 2272376 | 33377130 ~ 33377214 (-) | True | XLOC_002885 |