RNA id: TCONS_00055919


Basic Information

Item Value
RNA id TCONS_00055919
length 3199
lncRNA type sense_over
GC content 0.45
exon number 10
gene id XLOC_028888
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31535449 ~ 31795106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcagaggagcgagtaaagggctctctctcagagaaacacagtgtgagatcaggatcatttgtgtccagctctgtgtctctgaagagtgactggtctAAAGGTGGTCCTCCTCCAGACCTCAGAGGGAAAACACCATCATCAGTCAAAAGtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtcaATGGGTCATCTTCCACCAGacctcagagagaaaacaccatcatctgcccgAAGACACCTAGTGGcagatttagtttcttattcagacaatctccagtggatcttccagaatcttgagagcaaaatgatcagatttctgaagaatcaactGGAAAACTTTAGGAAAATCTTACAACACAAAAACAGACAAGAGTTTATAAAGGAGTTTATTGAGAACAGAAGCATTctcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccaggGCGAGTTGTTCTTtattaatcagcttaaatgtagcctgaagaagaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacctcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcggatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttgccagagactaaaggactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgaaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtttgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctggaaagaaacaatgtgatcttctatgagagcgatctgaaagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaagaaGGAGACGagaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgcACAGTGAGAGGATTTATTTTTAGACAGAAAAGCAGAAATAAAGGCATGATTGATTTGCTGAAGgctgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccagtcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaaggaaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagagGAAGTCTGTCATTTGCtgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggacCTGGAGGAGTTTGAACTTCAGAAATTCAAGAGATCAGatgagtgtctcatcagactatcagcagtcatcaaaacctccaaaagagctctgctacagagctgtaatctcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagaaaaGTGAAGCGTGTGAgcgagaatcagccgtatcctgatcatccagacagatttgatggtgtgtatcaggtgttgtgcagagagagagtgtgtggacgctgttactgggagattgactggagtggaggtgctggtgtgtttatatcagtgtcatataagagcatcaggaggaagggaggaggtgttgagtgttggtttggatgtaatgctcagtcctggagtttgatctgctcttcctccagattctcattcagacacaataacacaGAGACTGTTCTCCCAGTGgagccgctcagcaggagaataggagtgtttgtggatcacagtgcagtaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggttctGGCTTAAttatggatcatcagtgaaactgagctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057369 lncRNA downstream 6503 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00055918 lncRNA downstream 77106 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058244 lncRNA downstream 77168 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00057368 lncRNA downstream 387936 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00057367 lncRNA downstream 389004 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00055930 lncRNA upstream 39460 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00058246 lncRNA upstream 309674 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00058247 lncRNA upstream 309674 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00058248 lncRNA upstream 309674 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00058249 lncRNA upstream 338846 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00055913 mRNA downstream 322648 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA downstream 322732 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA downstream 323175 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055884 mRNA downstream 570019 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055920 mRNA upstream 6461 31653917 ~ 31668301 (-) False XLOC_028888
TCONS_00055922 mRNA upstream 12901 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055921 mRNA upstream 12901 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055924 mRNA upstream 13546 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055923 mRNA upstream 13546 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055912 other downstream 406976 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 409953 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 411009 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 413121 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 415238 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 608816 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 610126 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1742766 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1744319 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2319461 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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