RNA id: TCONS_00055927


Basic Information

Item Value
RNA id TCONS_00055927
length 2877
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_028888
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31535449 ~ 31795106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTGTACAATCATCATGAAAAGTATCATGAAGTGctgtttaaacagtgttttaatgatgaaatgttgaataaatctgctgtgttgactccagtgtgtgcagcgctgaactttaatcttctctgttttagttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGCACCCACCAATACATTTTAAGAGTGGAAACACAggacctgctgtcagttcagttcatcagaagagagcagaagcagagcccagctgtgtttctatgaagagtgacgcgtCTATGGGTGTACCAATAACATTTAAGAGTGAAAACACAggacctgctgtcagtgtggatAGAGATGGtcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccatcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacacgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtcttctgcaatgacatctttaaagcctcagctggagcaggacatgaggaacagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagacaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatagacagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccacatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaattagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacctgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagccgaagtatgaagagagagatccagagaaactcctgccgtccaacagaggagtgattctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcactgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaaccgctgagggtgatttatgatgaaaaatatgcatatgatcaatatctacagtccagctctgagaagtctctgtatgatctgctcagttcagcagTAGTTAAAGCTGTCTggagtagtaatggtcatctggatctgttctTGCGGTTtctgctgggcgtctcactggattccaatcagagactcttccaggatctgctgacacacacggaggagagctcagagaacatcaggagaatcacacagtacattaaagacgAGATCAAGAGAGGTAAACatctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactcactcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactctaataaattcaacacatcagatgtgggaagacggagactgatagcagctgtgagaaactgcagaagagctctgtgagtattcattgattgatcacagaagacacacatcagtctgcactgaagactcagatcagtttagtgaatcactgccctgctttaacagaaaatctttagctggccatatcgtccccctgtgagatcgctgatacaccatattactgcatggggacgcggcggcagtgttctgtttccttatttgctcatttatttcagcatttctaaacgtatttaacaaacttttcttgactttttactcacacaaacaacatttgtacttatttaataatctacttcatttgctttacagtttatcctggaaaataactcaaatccctgtaaatccctgtgctccaccagctgaataggacatttgttgatgtgtatttgctcaaatctaacacagtgttgctcttggataattgtgtttgttttttgatcagagaaatagtgtaattttagacacagtattgccgtcTCGCTGCAGACATGCctgtaatattacatttactgtaggcctaaacactaatctttacactgagctcagtaaaatgctctctgactagttattaataatctgttcaataattcattaCAGTCACGTGAATGGGGAAATACAGGTTTAGTTGAGTTAAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058245 lncRNA downstream 13546 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA downstream 13546 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00057369 lncRNA downstream 32902 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00055918 lncRNA downstream 103505 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058244 lncRNA downstream 103567 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00058246 lncRNA upstream 257983 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00058247 lncRNA upstream 257983 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00058248 lncRNA upstream 257983 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00058249 lncRNA upstream 287155 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00055934 lncRNA upstream 287155 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055913 mRNA downstream 349047 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA downstream 349131 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA downstream 349574 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055884 mRNA downstream 596418 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055931 mRNA upstream 17583 31716730 ~ 31795106 (-) True XLOC_028888
TCONS_00055932 mRNA upstream 244684 31943831 ~ 31993240 (-) False XLOC_028891
TCONS_00055933 mRNA upstream 244858 31944005 ~ 31984150 (-) False XLOC_028891
TCONS_00055937 mRNA upstream 397664 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055938 mRNA upstream 474990 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055912 other downstream 433375 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 436352 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 437408 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 439520 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 441637 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 557125 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 558435 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1691075 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1692628 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2267770 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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