RNA id: TCONS_00005294


Basic Information

Item Value
RNA id TCONS_00005294
length 968
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id XLOC_002858
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31262852 ~ 31295006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGCTCTTCCAGGGCAATAGTGGATGCTGTGGGCTGTTTGTGGATGAGGAACGAAGAAAACAAGAGTGGAGAAAGAAACTGATTTAAATAAAGCGAGTAGAGGGTAAAGAATGGAATGAGAAAACAAAGAATGCGAGTCACTCCCACCTGAGACTCACTAGCCTGAGTTGAACTGACTCCATGCCTGTGGAGCGTAGGCTTCAGGGAACAGAAGGACCCTTGAGTTTAATCTTTCTCGGGGCAGATCTGGGTCAGTGAAGGCCAACAGAAGGCTGGATCCCATGGGGCAATACCTGATATCCCTGAATGATTCCATTGTGAGCATCATGAGGTGGAGGCTCCCAGCTGAGATGCACAGTGTCATTACGCTCAGCAGGCATTGTTATGGACACATCCTGAGGTGCAGCGCTGGGGACTGACAACACAACACATGCTTACTGGCTGCTGCCGTAGGGCCGCACTTTGAACTCATACTTGTAGCCTCTCTTCAGAGGTCCAACATGGGTGTGAAGGCTAGGCTGAGGAACCCTTTGAGCCGTCCAGTCTGAGCTGGCAGGCAGGAGAGAGCGATACAGCACCTCAAAGCCTTCAAGATAATGAGGCTGTGAACCAAATGACTGCAACTAtacagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagagaaCTGATCATGATTTGATGGTgtttaaagagataattcactCAAATTAAGTTGAATCCCCATTTCCTGACCCTCAAGTTCCAAACCTGTATAAATTTATTTCTTCTAATGAacacaaaagtatatattttgaagagtcTTGGCCATTGATTTCTATTCAACAATGTGAAAACTCTGTGTAAGAAACCCATCCTATTTTTTCCATATTAAGATTATCATCTGAAAATAAGAACTTGACATTAccttaacattaaacaaaagagTTTGAGAATGTGATCC

Function

GO:

id name namespace
GO:0000338 protein deneddylation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006075 lncRNA downstream 1771765 29266270 ~ 29491087 (-) True XLOC_002843
TCONS_00005269 lncRNA downstream 2124848 29128202 ~ 29138004 (-) True XLOC_002841
TCONS_00006074 lncRNA downstream 2797826 28460213 ~ 28465026 (-) True XLOC_002834
TCONS_00005770 lncRNA downstream 2844673 28417651 ~ 28418179 (-) True XLOC_002830
TCONS_00006073 lncRNA downstream 2877283 28382085 ~ 28385569 (-) True XLOC_002828
TCONS_00006077 lncRNA upstream 783034 32077811 ~ 32084121 (-) False XLOC_002862
TCONS_00006078 lncRNA upstream 783034 32077811 ~ 32084624 (-) True XLOC_002862
TCONS_00006079 lncRNA upstream 921636 32216413 ~ 32250771 (-) False XLOC_002863
TCONS_00006080 lncRNA upstream 935162 32229939 ~ 32239728 (-) False XLOC_002863
TCONS_00005771 lncRNA upstream 935162 32229939 ~ 32250846 (-) True XLOC_002863
TCONS_00005291 mRNA downstream 42294 31020559 ~ 31220558 (-) False XLOC_002857
TCONS_00005292 mRNA downstream 87108 31020572 ~ 31175744 (-) False XLOC_002857
TCONS_00005290 mRNA downstream 157869 31019607 ~ 31104983 (-) False XLOC_002857
TCONS_00005288 mRNA downstream 246046 30997238 ~ 31016806 (-) False XLOC_002856
TCONS_00005289 mRNA downstream 247317 30999751 ~ 31015535 (-) True XLOC_002856
TCONS_00005295 mRNA upstream 4195 31298972 ~ 31440500 (-) False XLOC_002859
TCONS_00005296 mRNA upstream 4195 31298972 ~ 31562695 (-) False XLOC_002859
TCONS_00005297 mRNA upstream 5812 31300589 ~ 31563049 (-) True XLOC_002859
TCONS_00005298 mRNA upstream 443724 31738501 ~ 31782616 (-) True XLOC_002860
TCONS_00005299 mRNA upstream 505435 31800212 ~ 31805923 (-) True XLOC_002861
TCONS_00005293 other downstream 158098 31021356 ~ 31104754 (-) True XLOC_002857
TCONS_00005286 other downstream 731595 30531143 ~ 30531257 (-) True XLOC_002854
TCONS_00005276 other downstream 1523744 29736186 ~ 29739108 (-) True XLOC_002847
TCONS_00005273 other downstream 1554670 29708068 ~ 29708182 (-) True XLOC_002845
TCONS_00005263 other downstream 2339219 28923517 ~ 28923633 (-) True XLOC_002838
TCONS_00005308 other upstream 1247759 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005309 other upstream 1272847 32567624 ~ 32610694 (-) True XLOC_002866
TCONS_00005329 other upstream 2082041 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005330 other upstream 2082224 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005331 other upstream 2082353 33377130 ~ 33377214 (-) True XLOC_002885

Expression Profile

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