RNA id: TCONS_00055929


Basic Information

Item Value
RNA id TCONS_00055929
length 3747
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_028888
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31535449 ~ 31795106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaagaggaggaggcgGCGGAGGATATCCGGTTTACTCGTGATGAGCTTCTGGATTTGAGTGTCTCAGCTGCTGATCTATTCCTGCATTCAGCTGAATTATGAAGGCTGATCAATGACTGGAGATCTGTGATTGTTCATCAGTTTCTGCTGAAGATCAAACTCTTCAGGTCCATCATGggtaacacacacactgctggagatCAGGATTTGTCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGCACCCACCAATACATTTTAAGAGTGGAAACACAggacctgctgtcagtttggttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacaaGTCTATGATCCAACCAATAACATTTAGGAGTGAAAACACAcgacctgctgtcagtgtggatggagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacagcatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaggaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgagaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagactcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagagattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagattcagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgagaaGGACCTGATTAAGAGCGGCGtagacgtcactgacgcctcggtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagctttatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacaaAGAAGAGAAAACCGCTGAGGGTGATTTATGAGAGAGAATATTTATATAATCATTATCTACAGTCCAGCTCTAAGTCTCTGTAtgatctgctcagttcagcagtacataaagctgtcaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggtgtccaatcagagactcttccaggatctgctgacacacacagagaagagctCAGAGAACATCAGAGAAatcacacagtacattaaagacgAGATCAAGAGAGATGATGACCctctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggaggaactctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagCTGAGGGAAGATGGAGActgacagcagctgtgagaaactgcagaagagctctgctacagggctgtaaactcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggtcacgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagACTGATGACATGTAAACTCACTGTCGATTcgtgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgagctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggaggcactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcatctcattctgtctgaggagaacagagaggtgaagagtgtgagagagaatcagccgtatcctgatcatccagacagatttgatcatTATTTTCTtcatcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagattgtggtggtgtgtttatatcagtgtcatataagagcatcaggaggaagggaataGGTGATGAGTGTATGTTTGGacgtaatgctcagtcctggagtttgctctgctcttcctccagtttctcattcagacacaataacacagtgactgatctcccagtggagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttcttcaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggtttacTGTTggttctggatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagagagagtgtgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000166400

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058245 lncRNA downstream 38919 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA downstream 38919 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00057369 lncRNA downstream 58275 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00055918 lncRNA downstream 128878 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058244 lncRNA downstream 128940 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00058246 lncRNA upstream 257288 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00058247 lncRNA upstream 257288 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00058248 lncRNA upstream 257288 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00058249 lncRNA upstream 286460 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00055934 lncRNA upstream 286460 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055920 mRNA downstream 18074 31653917 ~ 31668301 (-) False XLOC_028888
TCONS_00055925 mRNA downstream 18147 31661002 ~ 31668228 (-) False XLOC_028888
TCONS_00055924 mRNA downstream 20032 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055923 mRNA downstream 20032 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055913 mRNA downstream 374420 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055931 mRNA upstream 16888 31716730 ~ 31795106 (-) True XLOC_028888
TCONS_00055932 mRNA upstream 243989 31943831 ~ 31993240 (-) False XLOC_028891
TCONS_00055933 mRNA upstream 244163 31944005 ~ 31984150 (-) False XLOC_028891
TCONS_00055937 mRNA upstream 396969 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055938 mRNA upstream 474295 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055912 other downstream 458748 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 461725 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 462781 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 464893 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 467010 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 556430 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 557740 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1690380 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1691933 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2267075 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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