RNA id: NM_001124451.1


Basic Information

Item Value
RNA id NM_001124451.1
length 1919
RNA type mRNA
GC content 0.55
exon number 2
gene id LOC100136172
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27495254 ~ 27499399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAACCTTTCTACAGGAACAAAATCGTCTCGAATCTCCAACGGGCAGTCATCATGGGAAAGCTGTGTGAGCTGGCCCTGGTGTCTCTTGTCCTCCTGGTTCTGCTTCATACTGACTCTACATGGGCCAAGAGaagtggcagcagcagcagcaaaaagaCATCATCCAGCAACAGGGGCACAGAAAAAAAGCCGTCGAAAACATCAAACACACAGACGGGAAGCTACCCTAGACAACCCCAAAGCCCCAATAGGAACCCCAACCCGTACCCAGCAGGAGGTAGTTATCCAGGGAGAGGTACCAATCAGAATCAGAACCCAGCCGGTGGATACCCTGCAGCAGGTGGAAACCCCAACCAGCAGTATCCAGGCCGGGGAACCAACCAAGGAGGATATCCTAACCAAAACCCTGCTGCTGGTGGCTATCCTGCTGCAGGTGGCTACCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAATCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGTTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCCGGGCAAATCCTGGGGGATATCCTAACCAGAACCCAGCAGCTGGAGGTTACCCCGCCGCGGGTGGTTATCCTGCAGCAGGAGGCTACCCCAATCAgaacccagggagaggaggagtcaATCCGGGATACCCAGCCGGAGGTTACCCTGCTGGAGGTTACCCAGTAAGAGGGGGAAATACTGGCTGGGGGCAGGCAGGGGGCCACCCtggtggagggatgggaggaggttACCAACCCAACTGGAACCCAAACAATAAGATCCTCAGTCCCCGCTATGGTGGAGGCTATGGTTATGGAGGTGGGCACGGAGGTATGGGAGGTGGCTCTCCCTTCTCACGTTCAGTTCAGGGAATGGGGCAGTACCCCTCTACTCAGTCCAAGGGGTTTGCTAAGAAGgcttttatggctgcaggggttGGGGCCGTGGCAGGGATGGCGATTGGCTATGGCCTTGGGCGTTTCCCTCGTCCAAACGTCAACTTCCGCAACCCTCAGGAAGAGCAGTCCTACAACAACTACATGTACAAAAAATACGGCGAACGCTCCACAGACGAAAACGACTATGGCCGGGACTACACCTACAAAGTACCTCCACGGGCAGAGTCCTACGACAGCTTCATGGATACCTGCATGAAGAGGAATGACCTTCTGCAGGACCAGGGCAGAGACTCCCAGGCCACACCTAACAACCAGAAGAACAACCCTCAGGGAGCCAACAGCCAGAGCATGCCCATCACTCCTGAGGTGGGGAACAGCAGTCCAGCTAGCAACCAGGAGGGGACAGACAAAGTGAAGCCTCTCACCCCTGCCCCTGGCGAGATAGCTGGAGAGGGTAAGGAAGAGGCTGATGGCCCCACAGTGAGCATTGAAGAGATTGGTTACCCTGCATTGGTGGAGCAGCTGAAGAACCGGAAGTGTGTGGAGCTGTACATAAACCACTCAGAGCGCTTCCTAGAGAAGCAGACAGCCGAACGCAGCAgcggcaacaacaacaacaacaacaaaaatctgaaCAGTCGCAGCAACCCCCTCGGTCAGGGGCTGCTACAGCTGATAACCAGTCTCCTCATGGTCCTGAGCAGCACTCTTCTACTACACTGAGACATATAGTAGGTGTGTCACAGTCGTCTGGAATAGCTTAATTTCATAGTCCCCCTTTCTCATCATGCCACTGATATCTTGTACGGATAGGTTAATTAAGTAAGGTGGAGATATAACCAGTACTTTCACTTATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2480763 lncRNA upstream 17140 27446668 ~ 27478209 (+) True G2170527
TU2480746 lncRNA upstream 59523 27435378 ~ 27435826 (+) True G2170514
TU2480745 lncRNA upstream 61648 27430858 ~ 27433701 (+) True G2170513
TU2480743 lncRNA upstream 67788 27427038 ~ 27427561 (+) True G2170512
TU2480742 lncRNA upstream 68729 27426384 ~ 27426620 (+) True G2170511
TU2480798 lncRNA downstream 4154 27502086 ~ 27502345 (+) True G2170556
TU2480803 lncRNA downstream 11037 27508969 ~ 27509205 (+) True G2170561
TU2480900 lncRNA downstream 139179 27637111 ~ 27637329 (+) True G2170643
TU2480910 lncRNA downstream 189998 27687930 ~ 27688168 (+) True G2170653
TU2480919 lncRNA downstream 200992 27698924 ~ 27699194 (+) True G2170662
XM_021591101.2 mRNA upstream 238570 27238683 ~ 27256779 (+) False sftpba
XM_021591100.2 mRNA upstream 238570 27238684 ~ 27256779 (+) True sftpba
XM_036967944.1 mRNA upstream 318415 27160500 ~ 27176934 (+) False LOC110509897
XM_036967945.1 mRNA upstream 318415 27163053 ~ 27176934 (+) True LOC110509897
XM_021591092.2 mRNA upstream 347645 27145344 ~ 27147704 (+) True LOC110509895
LOC118945286 mRNA downstream 88292 27586224 ~ 27586975 (+) True LOC118945286
NM_001160609.1 mRNA downstream 143046 27640978 ~ 27643345 (+) True prp14
XM_021591133.2 mRNA downstream 210651 27708583 ~ 27758941 (+) False LOC110509916
XM_021591134.2 mRNA downstream 245187 27743119 ~ 27758941 (+) False LOC110509916
XM_036967828.1 mRNA downstream 265603 27763535 ~ 27768291 (+) True LOC110509917
TU2480665 other upstream 170584 27322105 ~ 27324765 (+) False G2170458
TU2480666 other upstream 170584 27322105 ~ 27324765 (+) False G2170458
TU2480105 other upstream 962569 26528972 ~ 26532780 (+) True LOC110509877
TU2480075 other upstream 1030788 26463301 ~ 26464561 (+) True LOC110509876
TU2478131 other upstream 2292708 25199619 ~ 25202641 (+) True LOC110509866
TU2482164 other downstream 805273 28303205 ~ 28313151 (+) True gigyf1b
TU2482435 other downstream 1180916 28678848 ~ 28679677 (+) True LOC110509373
TU2483638 other downstream 2061638 29559570 ~ 29559959 (+) True G2173098
TU2483674 other downstream 2087662 29585594 ~ 29587472 (+) False G2173114
TU2483968 other downstream 2154637 29652569 ~ 29662234 (+) True LOC110509970

Expression Profile