RNA id: TCONS_00055931


Basic Information

Item Value
RNA id TCONS_00055931
length 3995
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_028888
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31535449 ~ 31795106 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgattgtttcctgaaagctctgctgatgtctgcattggtgttttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtcaATAAATCGTCCACCAGacctcagagagaaaacaccatcatctgccaaaagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgactggtcaATAGGTAAACCACCAGacctcagagagaaaacaccatcatctgccaaaagtgtgaatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctcctgaacaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAtcaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaactgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcagcatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcgtcagtacagtcttcacagacttctgctggactttcatcctgagcttgaagatctggagcccaagatttatgagcagtgcAGAGTTGTGTTCAtatttgatggtctggatgaaagcagaatcacactcaacttttcagacgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacctgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagggATCCAAAGAATCTGCAgggagatccagagaaactgcagtccaacagaggagtgatcAACAAACTtaaagtggctttcagacagctaaAGATCAACgtgaggaagcagaagtatgaagagagagatccaaagaatctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctataagaaggacctgattgagagcggcatagacgtcactgacgccgcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcagcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacaaAGAACAGAGAACCGCTGAGGGTGATTTATGATGAAGAATATTCATATAATCAATATCTACAGGCCAGGTCTAAGAACTCTCTGTATAATCTGCTCAGTTCAGCAGTAGTTAAAGCTGTCATgagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagagaagagctcagagaacatcaggagaatcacacagtacattaaagacaAGATCAAAAGAGAGGTCCgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagagactctctcctgctcactcctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactttaataaattcaacacatcagctgagggaagacggagactgatagcagctgtgagaaactgcagaagagctctgctacaggactgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggattgaagagtcaacactgtaaactggacacactgagGTTACagtgctgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgctggattcaggagtgaagaagctctctgatggattgaagagtcaacactgtaaactggacacactgaaATTggccatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaattctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaagacaaacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagcgtGTGTTAGAGaaacagccgtatcctgatcatccagacagatttgatgtgtggcctcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactgcagtggagattatagtgtgtgtatatcagtgtcatataagagcatcaggaggaagggagatggtgatgagtgtgtgtttggacgtaatgctcagtcctggagtttgatctgctttctctccagtttctcattcagtcacaatcacacacacactgatctcccagtgaagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttggGTTTGGGTTTGATATttattctggatcatcagtgaaactgagctgaagactgacaagagatttacccagaattctctgcaggagcagtcagcagcagtgagATGATCTGGAgtttcttctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgcgcgacaGTGTGTgtccacgtgtgtgtgtgtgtgcacagcaaattttagatagtagatttaactaccttagagttaaaattaacactccctcagagtttatatgggaaccactataagtgttaaaaataacacttttgaaagtgttaacattgtcaacaccaagagagtgttaattagcaaactcttattgtgtaaaatatctgttaaatttccgaaaaaataccagcagctgtggttgccagaatctttctgtgaaaaacatggaagttttatagaactgtata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055930 lncRNA downstream 28151 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00058245 lncRNA downstream 69274 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA downstream 69274 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00057369 lncRNA downstream 88630 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00055918 lncRNA downstream 159233 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058246 lncRNA upstream 162024 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00058247 lncRNA upstream 162024 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00058248 lncRNA upstream 162024 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00058249 lncRNA upstream 191196 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00055934 lncRNA upstream 191196 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055922 mRNA downstream 16544 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055921 mRNA downstream 16544 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055929 mRNA downstream 16888 31686375 ~ 31699842 (-) False XLOC_028888
TCONS_00055928 mRNA downstream 17583 31661002 ~ 31699147 (-) False XLOC_028888
TCONS_00055927 mRNA downstream 17583 31661002 ~ 31699147 (-) False XLOC_028888
TCONS_00055932 mRNA upstream 148725 31943831 ~ 31993240 (-) False XLOC_028891
TCONS_00055933 mRNA upstream 148899 31944005 ~ 31984150 (-) False XLOC_028891
TCONS_00055937 mRNA upstream 301705 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055938 mRNA upstream 379031 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055939 mRNA upstream 380226 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055912 other downstream 489103 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 492080 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 493136 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 495248 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 497365 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 461166 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 462476 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1595116 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1596669 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2171811 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

//