RNA id: TCONS_00058244


Basic Information

Item Value
RNA id TCONS_00058244
length 1542
lncRNA type intronic
GC content 0.37
exon number 1
gene id XLOC_028889
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31555894 ~ 31557497 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaccgtaggggggataagtggcaatagaacacagccaggaactcttCTGCGCGAGTCAGCGTGATGTGCGTGCGCGGGCTCATCATTTGAATTAAATAACGGACACAAGCAACGGGCGGAACGGTAATCAAAGGTAAGTAAGTTACGATATTCGACGTTTCACATGTTTTATTTGTCGTTTTACTTATAATTTATGTTGAATTGAACTTTAGATGTGTaacgttttacattataataatttttaaatgaacacttAACCACTTTATACGTTTTTATGTCGCCCTGTAGTGACGAGGTCATTGACAGCAGCTAATGAATAATAGctgttttggttatttatttggcGATTTCagcaaaattacttaattttatgtCTTCATTGCTTTCTAACCTGTGTAAAAATATAAGATGATCTGTTAAATCGACTTGGAATGAGCATAAAATATTGCTCCGGCTATAACGTTAAAGGCTAACTTAACGTTATAAGAATTAAGCACTTCGCAAATAGCATTAATGGTGCTTATCATCGAgctaacattttttaacatgtaaTAATCCTAACAAAGTGAATCGCTGTCGGTTCACGGTTTTGTTGCTCTGTTTGTAAATTTAGTGATGGTCTCCTCGCCAGAGAAGCTAGCAGCATTCAATGGGGAAGCTTTGCTATTTCGTAAGTTGTCTAACGTTACCCTATCGCTAGTCAAGTTAATTCTTTGTGGTTTCATTCTTTTCTGATTTCCTTTGTTCACAAACCATGCTTGTctgtttttttctgattgctGTGCTATGTTCTGGTGtaagttttttttcctgtttattaaaaataattttgtctaCATCCTTCTCTTTCGATTCACGTTAATGCAGTTTACTCATAaaagtatctttaaaaatgtttgtaaacgcattcattttttttattatatcatgaagctttttataatttcacaaggaaatgcaatccaaacaagaTCATTGGATTTCTCACAAAATACCATGCAAAAATATACTGAGAGAGGAGTCAAAATTTTGGCTAGTTTATGGTACAGATACTGTGGATTGGACATTTATATTAATGGAATTGTAATAGTAGATACCAGGTGAGATGTCATACtgattaatatgttatttttctTATAACTTTTTTATGGCAGTTTCGCTGGAATCTCCAATTGAAAACATCATCGTGTGCGCTTAGACTTCTGTTCCAGTTCTGACTACACCACACTCTGCTTATGTGGATCACTGACTACTATGTTCTCTgaaggtattcattcattcatttattaattcagtcatttattcattttcttttcggcttagtgcctttattaatctggggtcaccacagcggaatgaaccgccaacttatccagcacgtttttatgcagcggatgcccttccagcctcaatccatctctgggaaacatccacactcattcactacggacagttttagcctacccaatttacttgtaccgcatatctttggacagtgggggaaaccggagcacctggaggaaacccacgcaaactccacac

Function

GO:

id name namespace
GO:0004520 endodeoxyribonuclease activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057368 lncRNA downstream 309227 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00057367 lncRNA downstream 310295 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00055897 lncRNA downstream 406811 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00055896 lncRNA downstream 458272 31095829 ~ 31097622 (-) True XLOC_028868
TCONS_00058243 lncRNA downstream 492798 31060357 ~ 31063096 (-) True XLOC_028859
TCONS_00057369 lncRNA upstream 68831 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00058245 lncRNA upstream 77168 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA upstream 77168 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055930 lncRNA upstream 129481 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00058246 lncRNA upstream 399695 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00055913 mRNA downstream 243939 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA downstream 244023 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA downstream 244466 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055885 mRNA downstream 491310 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055884 mRNA downstream 491310 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055920 mRNA upstream 96482 31653917 ~ 31668301 (-) False XLOC_028888
TCONS_00055922 mRNA upstream 102922 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055921 mRNA upstream 102922 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055924 mRNA upstream 103567 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055923 mRNA upstream 103567 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055912 other downstream 328267 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 331244 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 332300 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 334412 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 336529 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 698837 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 700147 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1832787 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1834340 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2409482 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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