RNA id: XM_036967672.1


Basic Information

Item Value
RNA id XM_036967672.1
length 4549
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110509401
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27940621 ~ 28015435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cGTGGGGGGCGGTGGGGAGTTAGTTGAgggctgtgtggagagagagaatgccagaagaggaggaagataaatctctctctgtccaaccCTCTGTTCCGTTCCTGGATTCATTCTTGGGAGTCCGTCACCGTCCCGCCTGCTGTGCTGCCTCTGGATCTAAGTCTCCTGGATTACAGCTCCGTTTCTCCGCTCATTGCTCCTGACGCTTGAATTTCCACGGCAGGCAAAGTTGGGCATCCAGAGACTATATGTTGACTGCCTGTTCATTTCCTCTTGAATTTGTATGCTGTTTGAGCTTCAAAATGAAGTGTGATTTTAATATGACAGAGAAAAGAGCTCCGTCTCTTTTTTGGGGATTGTTTACTTATAGGATAGGCTAGTGATTTTGATATATTTTGAACTTCGTTGTCGCTGGTGATTTGGTTGTGAGGGACAAGATGAGTGGGGAGGGAGGTTAGAAATGTAGGAATTGTTGATGTcttttcatgttttatttttatcAAACAGAGACATTCTAACCTCACTCACCCGTCTTTCTTTTTTACTGACGATGTGACCTTAGTGGTCTCTGTTTTTCAGTGTTTTTTAGTGTTGCTGCATTTATTGCTCGTCACACTGGAGGGTCCGCTTTGGATGTGTGACTGCACTTGAACTCTCACCGTCCCCTGCTCTTCCCTTTTCCAGGGGGCTCTTAACCTAGACCCTCTCTCTTTAACCCTGTGTAaaacccctctcccctctctgggggcTCTCTCTGGACCTTCCCACCATTTTCTGTTGCTTGAGGACACAGACAGCCCCGCCAGAAGAGGGGCTGTTGGGTAGGAAGACACCCCCCTCCCAAAGGTGAGAGGGGGGGGAAGATGGCAGCTCTCGCCAGCTCTCTCATCAGACAGAAACGGGCGGTCAAGGACGACGGACAAAACCGACCGGTAGCCAACAAGAGGAAGCCTTGTCCCAAGAGCAACAAGTCTCTGTGCCAGAAACAGATCCTAGTCCTTATCTCTAAAGTGCGGCTATGTGGGGGTCGAAAAAGTCGAAAAGAAAAGAGACCGGAGCCCCAGTTGAAAGGCATCGTGACCAGGCTGTACAGTCAGCACGGATACTACCTGCAGATGCATCTGGATGGCACCATGGACGGCACAAGGGACGAAAGCAGCTCCTTCTCACAGTTCAACTTGATTCCTGTGGGTCTGAGGATCGTGGCGATCCAGGGGGCGAAGACAGGGCTCTACCTGGGCATGAACAGCGACGGGTACCTTTACACCTCTGAACACTTCACCCCCGAGTGTAAGTTCAAGGAGAGTGTGTTTGAGAACTACTACGTGACGTACTCCTCCATGCTCTACAGACAGAGCCAGTCGGGCCGCTCCTGGTATATCGGTATCAACCGCGACGGACAAGTCATGAAGGGCAACCGGGTGAAGAAGACCAAAGGTGCTGCACACTTCCTGCCTAAAGTTATAGAAGTTGCCATGTATAAGGAGCCATCGCTACACGAGCTAGTCAacgaacagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagaaggccCTGCCCAGAAGACAGTGAAGACGTCAGAAGAACGTCATGAAAGAACTTTCTCCATCAAGAACTGCAGGAAAGAAAAAAAAGCCCCCAAGGCTGATGCCTCGTAGCACAGGGGACCGATGGTGGGGGAAGGGCAGCAGTGACACTGAGAACTAAATAGGGACTTAATCGCCCATCATGCACTTGGGCTGGCTGGAGGAATGGTCCCCTTTCCCCAGAAGTGCACTGGGCTGCACCATGATGAAGTGTCAGGGGTCAACAGCCCATCAGGTCTGGGTCTGGGAGGAATTCCTCTCACCTGCCACCAGAGAGGAAGATAGACAAGGGCCCAAGTCAGCACCACCACCCTTCCTCCCTGTCAATCACCTTTACCCCTTCTCCTCTAGCACACTCACTACCAAAGGCACAGCCTGTATAATCTCTCTGTCATTCATCTACTGCCTTCCCATCACCTGTCCTAGTTTCTAGAAATCACCTCCACTCGCGCACACACTTTAATTTATAATTGTTGTATTTTGATGTGCAAATgtgtgattgtgtctgtgtgtatgtgtgagagagaggtgtgtaaCAATAATCACTTCATGTCATCATAATTACTACTCTCGAGTCCACTCTTCTAATTAATGGCAATCACCGCGGTGAAAGTGTGACTATGCCTGGCCTCCACCATCTGTCCACCTGCAAATCACACACCTCACAGCTGGAGGCGGGACATCAAAATGATGTTTTATTGGACAACATCGGGGCGGGATCTATTTTTATTTGGTAGCAGGGCTGTCTGTTGAACTGCAGTCAGCAAATCAatttcaaaaaagccaaatcatcTGTTGAAAGAGACAAGTCAAGCAAGCCCTTTTGGGATCAGAGTTATATCTACAGGCTACAAGATGACCTTTTCTATCTCCCTCTTTCAAAGTTCCTTTCTCTAACGATCAATCACAATGAGGAAGGTAATAATGGAGGGAACTGAAGAAGTTTATGATAATAAAtcatgaggatgatgatgataataataattacagtggtTACGGTGATTATGGTGATAATGATGATTCAACTACTGTATAACTTTGCAATAATCTCACAGACAGAAATTTCAGGGTATTCCATTATCTGAAGTGAATAGCCATTTTCCCTTCTGGAGCCATGAAAGCACCATGTCCAAAAAACTATGAGAGCCCCGACTTGTACATGACTGCCATGTCTGGCCCACATAACAGTAGCCTGACAgagatgatttcagtttgtgatcAGCAGGCTGACTCTGAGCATGTGAGAGCGTGATGGAGCTAAATACCCTCTGGGCCCAGAATGAGGCTATGTTATTATGATGTAACTCTTTGAAGGTTCTTTCCAGGGGGTTTTATGGAATACAGCCATCATTGCTTGAATTATTCACCTACATTTGTGTAAAATGTTGTAACTAGTCTCTGCAATATTTGTACAGTTTTGAGTCTCTTTAAGAGCTGGGCTGTGTGAAAAGAGAAAGTCAGCTTTTTTGCAAGTGTGTGAGATAGTTACTGAGTGAGTGGTTATGAATGCGCCTGCTTAACAATCTCCCTATTTGCCAGCCTCCCTAACTCAGCTTGTGGTGCTCTTTTTTGTTGACCATAATGCACAAAAATACAGTATTTCAGAGAACTTAAATTGATTAGATTCTCTGTCACCTGAAAGGTAATGCCAGTGATTGTTGAGTGTATCCTTTGCTTGGCAACTGTTGCCGACATAAAGCCGAGTTTAAAGCTGACATCAAAGCCTGAGGAGGCTCTGAGCTGGAGCCCCTACTTACTATTCTACAGACGTCCCACTCCTTATCCACTCACCAGCCTTATCAAATCAGCACAGAGGAATCCACTCGCAAATATGGATTTCTTTGTGTGCGTGGCTGTTTGTGATTGTGTTCTTCCCCCAGTGTAGCGATGTTTGTGGGAATATGTGAGTTTATTTTGGGAGTGcattgtgtgtgcatgcctgtgtgtgcatgtgtgggtttgtgtgcgtgcgtgtgtgtgttaagtGGGAGGTGACTTCTGCAATGTCCTTCACCCTGAACATAGGGCACTGGGAGGGCTCTCTTTGTGATGTCCTTCTCTGGGGAGGTGACATTTGTGGGGCAAATGGCCACCTTTCAAACACAGCACTGTCACGGTATTGTTATTGGCCTGAGAGTGCTGCAGGTATCAATGGGCAATAAAATCTAAAACAAATTGTGGACAACAGCACAGCACAACATATACAGGAACAGCCCAGTGTACAGAAGGTTGCTTTTCTAGGCATGGGGATATGTACAGTAAAATGCCGAAAGACATTTCTGACCTTGTACATAGCAGCGTAGCATGTTCCTGCCATGGCGACTATGCTGTTAGAGTGAGCTAGCATGCCATTGTATATTACAGAGCAGCACTGCACTGACCTCCTTTAATATCCAGCCAATGTGGAGACTTATACCACAGTCTCTTGGAGAATCCTGCTTAGAAAAATCCAGTCGCAGTGGACTGCCTGTAAATATGTTGACCAACATTACAGAAGAATGCACACAGAGAGGGCGAATAGATACAAATGTTCCAGAATGTACAGACTGTGAGATGGGTGTTTTCTGCATGTTATTAAGGACGAGAGTATGTCTGAGATGGTCTAGAGCAGTGGATCCCAAacctttaaaaaacattttttactaggcaagtcagttaaaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctattcaggggcagaacgagagatttgtaccttgtcagctcaggaatttgaacttgcaaccttctggttactagtccaacgctcgaaccactaggctgccctgccgCCCCGTATAGTCCTGtatcccttcaaacattcaacctccagctgcgtaccccctccagcaccagggtcagcgcactctcaaatgttgttttttgccatcattgtaagcctgaaACAC

Function

GO: NA

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2481997 lncRNA downstream 979 27937562 ~ 27939642 (-) True G2171620
TU2482015 lncRNA downstream 16962 27923457 ~ 27923659 (-) True G2171638
TU2482000 lncRNA downstream 37826 27901735 ~ 27902795 (-) True G2171623
TU2481947 lncRNA downstream 106521 27833363 ~ 27834100 (-) True G2171577
TU2481938 lncRNA downstream 112004 27828264 ~ 27828617 (-) True G2171570
TU2482107 lncRNA upstream 49003 28064438 ~ 28069007 (-) True G2171719
TU2482115 lncRNA upstream 60270 28075705 ~ 28082641 (-) True G2171725
TU2482118 lncRNA upstream 91332 28106767 ~ 28135613 (-) True G2171728
TU2482143 lncRNA upstream 138183 28153618 ~ 28159667 (-) False G2171747
TU2482144 lncRNA upstream 138183 28153618 ~ 28159667 (-) True G2171747
XM_021591140.2 mRNA downstream 40721 27895651 ~ 27899900 (-) True LOC110509921
XR_005040522.1 mRNA downstream 50332 27865704 ~ 27890289 (-) True LOC110509920
LOC110509400 mRNA downstream 90666 27843800 ~ 27849955 (-) True LOC110509400
XM_036968226.1 mRNA downstream 100945 27835170 ~ 27839676 (-) True LOC110509919
XM_021591138.2 mRNA downstream 100946 27835170 ~ 27839675 (-) False LOC110509919
XM_021591142.2 mRNA upstream 241374 28256809 ~ 28265547 (-) False LOC110509923
XM_036968010.1 mRNA upstream 252672 28268107 ~ 28269824 (-) True LOC110509372
XM_036967811.1 mRNA upstream 255157 28270592 ~ 28273502 (-) True LOC110509924
LOC110509403 mRNA upstream 261011 28276446 ~ 28279590 (-) True LOC110509403
XM_036967966.1 mRNA upstream 516562 28531997 ~ 28536813 (-) True LOC110509929
TU2481996 other downstream 3808 27935454 ~ 27936813 (-) True G2171619
TU2481898 other downstream 179919 27757983 ~ 27760702 (-) True G2171531
TU2481603 other downstream 744604 27194550 ~ 27196017 (-) False G2171272
TU2481600 other downstream 744604 27194621 ~ 27196017 (-) True G2171272
TU2479448 other downstream 1933749 26006141 ~ 26006872 (-) True G2169325
TU2482485 other upstream 241611 28257046 ~ 28262789 (-) True LOC110509923
TU2482722 other upstream 545727 28561162 ~ 28576965 (-) True LOC110509931
TU2482898 other upstream 804315 28819750 ~ 28820509 (-) True G2172414
TU2483840 other upstream 1409288 29424723 ~ 29427867 (-) False G2173258
TU2483841 other upstream 1409288 29424723 ~ 29427867 (-) True G2173258

Expression Profile