RNA id: TCONS_00057369


Basic Information

Item Value
RNA id TCONS_00057369
length 344
lncRNA type intronic
GC content 0.33
exon number 2
gene id XLOC_028890
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31626266 ~ 31628100 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAgcaatttatatgtattattacatcacagacaggaagtgacatcattgaGCTCTCTTTAACAGCACGGTGGAAAAGAAGGCGAgatatattgtcatttatttacattttttgatgttTATTATGGTTAGGAAGGGTACGGTCAAGCTTAACAATTCAACCCTGTAACGTAAAACTAAGATGGAGTATGATTGTTTTCTTAATGAAATGTTGGTTTTACAGCAAAAGCTTTGTGAAATGCTATTATTAAACTCAGTTTAGTCCGTTACAGGGTTGAGAATAACGGCTGTGCAAAtaagaataaaagagaaaataatataaagCTTTAATGGCTGAGGGGGGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055918 lncRNA downstream 68769 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058244 lncRNA downstream 68831 31555894 ~ 31557435 (-) False XLOC_028889
TCONS_00057368 lncRNA downstream 379599 31245741 ~ 31246667 (-) True XLOC_028886
TCONS_00057367 lncRNA downstream 380667 31241123 ~ 31245599 (-) True XLOC_028885
TCONS_00055897 lncRNA downstream 477183 31148179 ~ 31149083 (-) True XLOC_028869
TCONS_00058245 lncRNA upstream 6503 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA upstream 6503 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055930 lncRNA upstream 58816 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00058246 lncRNA upstream 329030 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00058247 lncRNA upstream 329030 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00055913 mRNA downstream 314311 31247968 ~ 31311955 (-) False XLOC_028887
TCONS_00055914 mRNA downstream 314395 31302460 ~ 31311871 (-) False XLOC_028887
TCONS_00055915 mRNA downstream 314838 31302700 ~ 31311428 (-) True XLOC_028887
TCONS_00055884 mRNA downstream 561682 30884012 ~ 31064584 (-) False XLOC_028859
TCONS_00055920 mRNA upstream 25817 31653917 ~ 31668301 (-) False XLOC_028888
TCONS_00055922 mRNA upstream 32257 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055921 mRNA upstream 32257 31660357 ~ 31700186 (-) False XLOC_028888
TCONS_00055924 mRNA upstream 32902 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055923 mRNA upstream 32902 31661002 ~ 31666343 (-) False XLOC_028888
TCONS_00055912 other downstream 398639 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 401616 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 402672 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 404784 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 406901 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 628172 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 629482 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1762122 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1763675 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2338817 33966917 ~ 33967068 (-) True XLOC_028918