RNA id: TCONS_00055935


Basic Information

Item Value
RNA id TCONS_00055935
length 452
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_028891
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31943831 ~ 31993242 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagaagaggaagaggaggcgGAGGATGTCCGGTTTCTTCTAGAGTTTCTACTGGAGATCAAACTCTTCAGAtccatcatggaggacacacacacacctagagaGCAGGATTTGTCTACAGGATGCAGttcagttcatcagaagagagcagaagcagagcccagctgtgtgtctatgaagagtgacgcgtCTATGGATCCACCAATGAAATTTAAGAGTGAAAACACAGaacctgctgtcaggtagatcatctctttaatatctgcaagtgatgagtattttcataataaatgaatcaggtaATTAGTGTTGTGGATCTGTTGGGTTTCAGATGTTAGATGTTGTATCTGAGCTCTGCAGGATAGTGCTTGAAGATCTCCGCTTTACACTTCAGGCCACAATAGATTCTATGCACGAACTCTGCTGACGTATTTCCGGTAGAAAATAAGCCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164722

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058248 lncRNA downstream 31676 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00058247 lncRNA downstream 31690 31957130 ~ 31960094 (-) False XLOC_028892
TCONS_00058246 lncRNA downstream 31856 31957130 ~ 31959928 (-) False XLOC_028892
TCONS_00055930 lncRNA downstream 303205 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00055919 lncRNA downstream 344328 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055936 lncRNA upstream 48852 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055951 lncRNA upstream 437340 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055952 lncRNA upstream 439481 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00058250 lncRNA upstream 472963 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055958 lncRNA upstream 723612 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00055933 mRNA downstream 7634 31944005 ~ 31984150 (-) False XLOC_028891
TCONS_00055931 mRNA downstream 196678 31716730 ~ 31795106 (-) True XLOC_028888
TCONS_00055929 mRNA downstream 291942 31686375 ~ 31699842 (-) False XLOC_028888
TCONS_00055927 mRNA downstream 292637 31661002 ~ 31699147 (-) False XLOC_028888
TCONS_00055937 mRNA upstream 103569 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055938 mRNA upstream 180895 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055939 mRNA upstream 182090 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055940 mRNA upstream 182853 32176095 ~ 32179699 (-) True XLOC_028895
TCONS_00055941 mRNA upstream 198136 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055912 other downstream 764157 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 767134 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 768190 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 770302 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 772419 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 263030 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 264340 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1396980 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1398533 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1973675 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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