RNA id: TCONS_00058247


Basic Information

Item Value
RNA id TCONS_00058247
length 2965
lncRNA type intronic
GC content 0.32
exon number 1
gene id XLOC_028892
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 31957130 ~ 31960108 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCCGCACGGAAGACCTGTCACTCACACGGCAACTCCAGCTTTATGACATCGTCGGCCAGCTGCGCTAATTAAGGTAGGTTTCTCAGTTGTCTTTTGATTTCGGTGTTTTTTTAGGACTTTTTCAAAATCTTTCTGAATTTGTTCATAAACCTAAATTATTATACCGAATGTAAAGGTTAATGAGATCATTAATCGCATTGTACGGTACTTGCTATTTAAAAGCAAACGGTTAATTTATAACGGTCAACTCGTTACGTTAGCCACTTCAGAGTCCGTTTTCTGAGGCTAACGTTATATTATCTTCTACAACCACACAAATCTATTAACTTAAACCATTTTGCAGACATAATGGTGTTAGTTTGATTTATTGTTGAACTGCTCTTCATCCAAACCTTCGAGGTGGCCATATGAGCTGGTATATTGTAGAATGGCAACGTGAGTACAATAATGTTATCTGTAACGTTATCATAAAAAATGCACTGATATTTAACCAAACTTCGCTTAGATGATTTCTAATGTACagattatatattatatcttGTAAACCCAACCAAGTAATGTCATAATTATATTCAAGTTCATTTAAATCAtgaaaatatatgttaaaatcTTGTTTTTAATTGATTTGAAAAGTCTTTCTGAATGCATTACTCTTCTTATCATCTTGTGCGTTTTCAGATATCATTGCACGTTCTCATTTTTAGGGGTATACCACAAATAgtatctttcttttttctcttttcagtACTGAACTCCATCCAGCCCCAGTTAAGCAGAGCTGAATCAGCTGATCAAGATCTCCAGTGTTACAACAATCTGCCAGGTACAGTAGTGTGTTACAGCAAATCCCTGCAAGATAGCAAAGCATGAGCTTTCAAGTTTAAGAAACCCTTCGATATTGATTAGCCAGTAATCACTGTTGGattattaaatcttttttaaaacagtatttttttcttcatttccatTGCTCTTGGTAAGCCAGTTGAAGCACATTTGCGAATTTTTCATTGTCAATTTTAGTCAGTCATAATAATTTGTTTTGGGTCAATTTTTCATTTGCACAATCAGTGCACAGCCCTGGAATCGGATTGACCTCCTCCAGACCAAAACATATGGGTTATGTACAACATTTAAATCATATTCATtaatcttttcttctttttttttcacttgcagATAAACAAAGATCCATCCAGGCACAGGTTGCTGCATTTTTTTGATGTACATACAGGTACTTTTTTTAACTGATGttcataaacatatttaatataagaataacttgtatttaaatctaattaaaggattagttcataAAGAAATGTAGGTTACGCCATTAATTTCTCATCTTTGTTTCATTCCAAACATTTGttcatctttagaacacaaattatgatattttagattaaatctaagagctctctcatcctccatagacagcaaggttccAGTTTCAAAATTCAGAAAAGGAACCCAAACAAATCCTCAGACCATATGCCTTCACTGGTTCAATCAAAATATTATGAAGCTATGAGaatatgtttatgcacacataaaacaagaataataactttattaaacagtttcTTCTCCTTTACTTGATAATATTCAGTTCGAACCACTGAAGGCACACGTTCTGTTTTAAGagttataagttattttgtttgataagccccagatttggcttcagtactgactaatctaatgtgtagGCACAAATATAATGATAGATTTGTGATCGATTGAATGTGATTTGTTGATTGTGCACTTAAGAACTTAAGTGCACTTTTACACCctctttatcatttaatttaagtaTGTGATTGTTTGACTCTTTAATGCAAACAAGTAGACCGTTCTTCCAGCTGCTGTCAAAAtgaataattgttgttttttactgaCATTTGTTTTACAGATGAACTACCTGGCGAAGCAATCCTTGGAGCTTCTGTGCACAAAACATGAAGACAGTTCCATCAGAATGACATCTTTGGTGCCTACAGCCTAAAATGGAAAAACTAGCAAGAAATCTGAGTTGAGAAGCATTCAACTAAGTTGCTAGTTTAAAGGTGGTGATCACTGTGATTCATCGGTTAGAATGCATGAGTCTGGTTTAGTGAACTTTGGTTGCTTTATTCCACATTGGTGAATAAAAATGTGATTTGTTTATAACACACACAAATCCACCAAACAACGATAGTTAGCAACACACAACTTCACTGCCAGATGCTTCACTCAGACTGTTTTGTTCTCTCATGTGCACATCTTTAAACGGCATATGTGATTAGCAATCCGTTAGTGACCTCTACTGGACAGATTTGTGTAATGCTTTGTAACACTGAGCTTTCTAACATCTTTATATTTGTAACAtcttctatatatatttttttattattgcctaATAATAATTGTCATAAATTAAACCAAAGCCAAAAGTTTTCTAACTACTTGGAACAGTTGACTGAGGAAGCGATTTTTTTGTGGGTTTTAAGGTAAGACCCACAAAATTATAAACATTGTAAACGGACAATGCAGATAAATTTCCAATATTagatttaataaacatttcatgACATCAAGTGGTGACTTGTTTTCCACAATTGTTCTTATGTTTTTAGAAGGTTTCTCCAActcttttatacattaacatctatattattacatttaaaatatttgccaATCAATTTTGTTGCTTAAAATGTCTTATTCATATGTATTTTTTCTGCAAATGcaaattatttgaataattgaCCAATCATGGGATCTATTATTAGTGTGATTCACTAGATTTGCaacatttgttgtttaaaatgttttatttataaatgtattgttctgcaaatgcatatttttaaatgtaatttactaGTGATGGATCATACTTATATGAATATTTATCACTTGaaacatgcatgcatttattttgtttaaaatatttatctgcAAAtgctgattattttaat

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:1903361 protein localization to basolateral plasma membrane biological_process
GO:0097025 MPP7-DLG1-LIN7 complex cellular_component
GO:0098793 presynapse cellular_component
GO:0097016 L27 domain binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055930 lncRNA downstream 268551 31686916 ~ 31688579 (-) False XLOC_028888
TCONS_00058245 lncRNA downstream 309674 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00055919 lncRNA downstream 309674 31634603 ~ 31647456 (-) False XLOC_028888
TCONS_00057369 lncRNA downstream 329030 31626266 ~ 31628100 (-) True XLOC_028890
TCONS_00055918 lncRNA downstream 399633 31555894 ~ 31557497 (-) True XLOC_028889
TCONS_00058249 lncRNA upstream 26208 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00055934 lncRNA upstream 26208 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA upstream 31690 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00055936 lncRNA upstream 82000 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055951 lncRNA upstream 470488 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055931 mRNA downstream 162024 31716730 ~ 31795106 (-) True XLOC_028888
TCONS_00055929 mRNA downstream 257288 31686375 ~ 31699842 (-) False XLOC_028888
TCONS_00055928 mRNA downstream 257983 31661002 ~ 31699147 (-) False XLOC_028888
TCONS_00055937 mRNA upstream 136717 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055938 mRNA upstream 214043 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055939 mRNA upstream 215238 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055940 mRNA upstream 216001 32176095 ~ 32179699 (-) True XLOC_028895
TCONS_00055941 mRNA upstream 231284 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055912 other downstream 729503 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 732480 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 733536 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 735648 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 737765 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 296178 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 297488 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1430128 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1431681 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 2006823 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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