RNA id: TCONS_00055940


Basic Information

Item Value
RNA id TCONS_00055940
length 981
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_028895
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32174137 ~ 32180155 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaaaaTTCAGAGTCAAACAgaaagatctgcaggaacaaacagacctgatggtgctgaaagaagagacacaTCAATGGAATGAAATAGAAGAGAAACACCAAGACATAACGACTGAtaaaaaacccacactgactaaaaagacttcatcatgcggaagacctcggaaatccaagtcTAGTTGTAATTTGAGCTGTAAAcagagtagaaagagtttcagtcaaaagccaaaccttgatgttcacactagaaagaaaccttacacctgcaaacagtgtggaaaaagcttctataatacaggaaacttaacagtgcacatgagaattcacactggagagaggccgtacacatgccaacagtgtgggaaaagcttctattctacaggaaacttggcagtgcacatgagaattcataCTGGGGAGAGGCTCtactcttgccctcagtgtggaaagagttgtaAGCAAAATGGCAATCTTGAAgcccacatgagaactcacactggagagagaagctttatttgcacacagtgtgggaaaggtttttctcaaaaacaaaaccttaccatccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccacatataggctcactcaaacaccacatgataagtcacaccggggagaagccgtttgcatgtgctcattgtggaaagagcttcacaaccaaagctagcctcatgaatcacatgaatggtcacactggaaccaaagtgtttacatgtgatcattgtggaaagagtctcacatgcaaagactccattaagcaacacatgaagactcacttAGGAGAGCGTTttcgatgcagtgagtgtggaaaggtcttcaaacataaaagaagcctcgtcaatcacatgaaCTTAAGGTCTCTCACCCGGGATAGCATGGAATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055936 lncRNA downstream 133555 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055934 lncRNA downstream 182853 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA downstream 182853 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00058249 lncRNA downstream 183949 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00058248 lncRNA downstream 215987 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00055951 lncRNA upstream 250883 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055952 lncRNA upstream 253024 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00058250 lncRNA upstream 286506 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055958 lncRNA upstream 537155 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 537619 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00055937 mRNA downstream 78690 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055932 mRNA downstream 182855 31943831 ~ 31993240 (-) False XLOC_028891
TCONS_00055933 mRNA downstream 191945 31944005 ~ 31984150 (-) False XLOC_028891
TCONS_00055931 mRNA downstream 380989 31716730 ~ 31795106 (-) True XLOC_028888
TCONS_00055929 mRNA downstream 476253 31686375 ~ 31699842 (-) False XLOC_028888
TCONS_00055941 mRNA upstream 11679 32191378 ~ 32192868 (-) True XLOC_028896
TCONS_00055944 mRNA upstream 249880 32429579 ~ 32458327 (-) False XLOC_028899
TCONS_00055945 mRNA upstream 249880 32429579 ~ 32466449 (-) False XLOC_028899
TCONS_00055946 mRNA upstream 249880 32429579 ~ 32466676 (-) False XLOC_028899
TCONS_00055948 mRNA upstream 249880 32429579 ~ 32642681 (-) False XLOC_028899
TCONS_00055912 other downstream 948468 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 951445 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 952501 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 954613 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 956730 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 76573 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 77883 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1210523 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1212076 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1787218 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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