RNA id: TCONS_00055941


Basic Information

Item Value
RNA id TCONS_00055941
length 987
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_028896
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 32191378 ~ 32192868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgttttatttatttatttcagacctaattgaagagaaagagggaagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatggtattttaaaaaggagagacaagaatcgtttcacctgcacccagtgtggaaagagtttggcaagcaaaagcagtcttaagattcacatgagtaTCCACACTGgagagaaaccattcacatgcactcagtgcggaaagagttttaactgctcatcacaccttaatcaacacatgagaatccacactggtgAAAaatcattcacatgcactcagtgtgggaagagtttcagccaatcatcaaaccttaatcaacacatgaagatccacactggagagaaaccattcacatgcactcagtgtaggaagagtttcagccaatcatcatcccttaatgatcacatgaagatccacactggagaaaaaccattcacatgcactcagtgtgggaagagttttaaccgctcatcaaaccttaataaacacatgaggattcacactggggagaaaccctttacatgcactcagtgtgggaagagtttcagccaatcatcatccctttatcaacacatgaggatccacactggagagaaaccattcacatgcactcagtgcggaaagagttttaactgctcatcacaccttaatcaacacatgagaatccacactggtgAAAaatcattcacatgcactcagtgtgggaagagtttcagccaatcatcaaaccttaataaacacatgaggattcacactggggagaaaccctttacatgcactcagtgtgggaagagtttcagccaatcatcatccctttatcaacacatgaggattcacactggagagaaaccattcacatgcactcagtgtgggaagagttataGCCGATCATCATCCCTTCATCTACACATgttgagccacactggagagaaaccattcacttgcacttga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055936 lncRNA downstream 148838 32042094 ~ 32042540 (-) True XLOC_028893
TCONS_00055934 lncRNA downstream 198136 31986302 ~ 31993242 (-) False XLOC_028891
TCONS_00055935 lncRNA downstream 198136 31991784 ~ 31993242 (-) True XLOC_028891
TCONS_00058249 lncRNA downstream 199232 31986302 ~ 31992146 (-) False XLOC_028891
TCONS_00058248 lncRNA downstream 231270 31957130 ~ 31960108 (-) True XLOC_028892
TCONS_00055951 lncRNA upstream 237714 32430582 ~ 32432589 (-) False XLOC_028899
TCONS_00055952 lncRNA upstream 239855 32432723 ~ 32456694 (-) False XLOC_028899
TCONS_00058250 lncRNA upstream 273337 32466205 ~ 32467230 (-) False XLOC_028899
TCONS_00055958 lncRNA upstream 523986 32716854 ~ 32717980 (-) False XLOC_028901
TCONS_00058251 lncRNA upstream 524450 32717318 ~ 32718201 (-) True XLOC_028901
TCONS_00055939 mRNA downstream 11223 32175332 ~ 32180155 (-) False XLOC_028895
TCONS_00055938 mRNA downstream 11679 32174137 ~ 32179699 (-) False XLOC_028895
TCONS_00055940 mRNA downstream 11679 32176095 ~ 32179699 (-) True XLOC_028895
TCONS_00055937 mRNA downstream 93973 32096811 ~ 32097405 (-) True XLOC_028894
TCONS_00055932 mRNA downstream 198138 31943831 ~ 31993240 (-) False XLOC_028891
TCONS_00055944 mRNA upstream 236711 32429579 ~ 32458327 (-) False XLOC_028899
TCONS_00055945 mRNA upstream 236711 32429579 ~ 32466449 (-) False XLOC_028899
TCONS_00055946 mRNA upstream 236711 32429579 ~ 32466676 (-) False XLOC_028899
TCONS_00055948 mRNA upstream 236711 32429579 ~ 32642681 (-) False XLOC_028899
TCONS_00055947 mRNA upstream 236711 32429579 ~ 32642681 (-) False XLOC_028899
TCONS_00055912 other downstream 963751 31227559 ~ 31227627 (-) True XLOC_028884
TCONS_00055911 other downstream 966728 31224544 ~ 31224650 (-) True XLOC_028883
TCONS_00055910 other downstream 967784 31223488 ~ 31223594 (-) True XLOC_028882
TCONS_00055909 other downstream 969896 31221376 ~ 31221482 (-) True XLOC_028881
TCONS_00055908 other downstream 972013 31219259 ~ 31219365 (-) True XLOC_028880
TCONS_00055942 other upstream 63404 32256272 ~ 32256435 (-) True XLOC_028897
TCONS_00055943 other upstream 64714 32257582 ~ 32257730 (-) True XLOC_028898
TCONS_00055966 other upstream 1197354 33390222 ~ 33390384 (-) True XLOC_028909
TCONS_00055967 other upstream 1198907 33391775 ~ 33391921 (-) True XLOC_028910
TCONS_00055975 other upstream 1774049 33966917 ~ 33967068 (-) True XLOC_028918

Expression Profile

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