RNA id: XM_036967421.1


Basic Information

Item Value
RNA id XM_036967421.1
length 2589
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110509993
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29914857 ~ 29925677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTACTGCTCCAGACTGATGTGTGCGTTTAAATCTGCACAGGTTGAAAAGCAGCATATCACTAGCCATATACAAGCCATATAAGCAATGCTATATGCTTTAGCGACCTATATTTTCTATCAATGATTTAGAATGGGACTCCAATAGGTATCTTGACATTGAACAGTCAACCCTGTGCAGACTCTTATCTTTTTTGGTACTGTACTTGCGGTGGCTTGCTTTTGAAGACAGTGTGAGCAAGCAACTGAGCATGCCGTTTGTGGAATTCATAGCAGGATGCATCTCAGGAGCAGTAGGGTTGGCTTTTGGTCATCCAATGGACACAGTGAAGGTGCGTCTGCAGACCCAGGTTAAATACAAGGGGATTTGTGACTGTGTGGCTAGGACATACACTCGTGAAGGGATCCCTGGGTTCTTCAAGGGCATGACATTTCCTGTCCTGACTACTGGCATCACCAACGCTGTGGTCTTTGGTTCCTATAGCAATGTTTTAGACTGCCTCACCCAGTCCCAACGGAATGACCGAATCCAAGGCAACCCTGCCTCGGCATCAGCAGTCTTCGCAGCTGGCTGTTTCTCAGGTCTGGCACAGGTGGTGGTTACTGCGCCTGTTGACCTGGTGAAGGTACGCTTGCAGTCCCAGACCAAGGGCTGGGCTGGGGTCGGTGGTGACGGGTATCGAGGTCCCATTCACTGTGTGACTGTCATCCTGAGGGAGGAGGGGCCAAGGGGATTGTTTCGAGGGGGGTTGGCTCTTACCCTGAGAGATGTACCCTGCTATGGAATCTACTTCTTGCCTTACGAAATCACCTGCAGGTTTCTGACTGAAGAAGGCAAACGGCCAGGCACATTTGCAGTATTGATGGCGGGTGGGGTGGCAGGCGTGGTGACGTGGGCCTTTGCCACGCCCATGGATGTGATGAAAGCGCGGCTGCAGATGTCCGGTGCTGGGGGCCGGGTGTACCAGGGGGTCCTGCACTGCATGAGTGTGAGTCTGaaggaggagggggtgagagtGTTCTTTAAGGGGCTCCTCCTGAACAGCCTGAGGGCCTTCCCTGTCAACGCCATTACCTTCCTCAGCTATGAGAGCCTGATGCGTTTCCTCACCCGGCCGTCTGCAGACTGACCACAAGACTATATGCATCTCCTGGATACACTCCGGTCGGACCAAATGATGGAAAGAATAGCAACATTGGATGGGCAAACCATTATGTGAAATGaactggtatatacagtataccttAGCATGCTATACTCAATTGTATCTCCTAAACTGGAGTTTCACACTTTGTGTTATCCTCAATGTGGGCACTCAGACAGGGCTCATGATGCTGTTTTAGTAGGACACAGTGCTGTGATATCATAGGGTGTCACCATACTTATGGATGCAAACTGTCATACAGCATCACCTCTCACAGAGCTATGATACCATCAGTATTTTATATCATGAGACAAAACCTTGAATATGAAAACACCTGGAAACCAAATGTTTATACCAAGACATGGTGTATTTATGTACTGGTATACTATATGAACTTCATAGCCTTCATTTATTAAACTTTTTAATTAACAAAATGTGAAGCAATGGGAATGTAGTTGGTTTATTGCTGACAACCAATCCTCAATTAAAATCAACTTTTTTAGTTAAATAAACCCCCTTCCCCAAAATGTAAACATTTAGTAAAATGATGCATCTTCTACTTATTGCATAAATcaatgtattcacccctttggatttattcacattttgttgattgacaaagtgggattgaaatggaCTTAGTTGTGATTTGTCATTGAGCATCACAGAATACCAAAGTGAAAAGATTTCAAAAATGTTAGCATATAATAACAGTTGTTGCAAAACTATTCAGCCCTTTTGTTTAGagaagcctaaattagttcaggagtcaAATGCGGCTTAACCAACCacaagttacatggactcactctgtgtgaaataataggggttgacatttcttttaatgactacctcttcCTCTGTCCCCAATACATACATTGAACTACAAAGACTAGGCAGCTTTTCAAAAGCCtcagaagggcagtgattggtagattaAATATCTGATCTAGTATTGTTATCcatctttaagcatggtcaagtttattatgctgtggatgatgtattaaaccacacacacaaagagagtcgttcttctgaactgagctgcaagacaggaaggaaactgctaaGAGATGTCACCAATGTTAAAACAGCTCCAGTTAAATGGCTGTgaagggagaaaactgaggatggatcaacatttcAGTTACTCCACAATGAAATGTAAAGAATAAAAGTAAAATAACCTTTTTGGCCTAAATAAAAAGCCTTATGCTTGAGACAAATCCAACAcgtcactgagtaactgcctccttattttcaagcatggtggtggctgcatcatggtatgggtattcTTGACGTTGGCAAAGACAGgagtttcaggataaaaataaatgggatGGAGCTAAGCTTTACACCAAACACAGAGGAATTTACCTTTCAGCATGGCAATAACcaacaacacaaggccaaatctacactgtagcaggacaataacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484178 lncRNA upstream 22728 29891987 ~ 29892424 (+) True G2173553
TU2484206 lncRNA upstream 34917 29879952 ~ 29880235 (+) True G2173581
TU2484205 lncRNA upstream 35677 29879208 ~ 29879475 (+) True G2173580
TU2484195 lncRNA upstream 36454 29877775 ~ 29878698 (+) True G2173570
TU2484186 lncRNA upstream 40945 29871659 ~ 29874207 (+) True LOC110509988
TU2484229 lncRNA downstream 43507 29969184 ~ 29970572 (+) False G2173603
TU2484230 lncRNA downstream 44298 29969975 ~ 29970572 (+) True G2173603
TU2484247 lncRNA downstream 57647 29983324 ~ 29995153 (+) True G2173614
TU2484244 lncRNA downstream 74083 29999760 ~ 30000561 (+) True G2173611
TU2484241 lncRNA downstream 80386 30006063 ~ 30007457 (+) True LOC110509999
XM_021591245.2 mRNA upstream 26410 29886289 ~ 29888742 (+) True znhit2
XR_002471519.2 mRNA upstream 40915 29869091 ~ 29874237 (+) False LOC110509988
XM_021591242.2 mRNA upstream 43687 29869114 ~ 29871465 (+) False LOC110509988
XM_036967930.1 mRNA upstream 55710 29844224 ~ 29859442 (+) True cnih2
XM_036967932.1 mRNA upstream 57459 29844224 ~ 29857693 (+) False cnih2
XM_021591256.2 mRNA downstream 14630 29940307 ~ 29940985 (+) True LOC110509996
XM_021591258.2 mRNA downstream 26815 29952492 ~ 29956193 (+) False LOC110509998
XM_021590273.2 mRNA downstream 47889 29973566 ~ 29977591 (+) True LOC110509374
XM_036967378.1 mRNA downstream 52797 29978474 ~ 30007461 (+) False LOC110509999
XM_021591260.2 mRNA downstream 124511 30050188 ~ 30107501 (+) False LOC110510000
TU2484176 other upstream 18873 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 43835 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 252918 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 327680 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 355193 29559570 ~ 29559959 (+) True G2173098
TU2484191 other downstream 26860 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 211046 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 393971 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 411175 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 538265 30463942 ~ 30468124 (+) True G2173841

Expression Profile